JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC39B_chr9_15158622_15312216	0/0	t0180	8510	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0181	8510	1	0	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0182	8510	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0183	8510	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0184	8510	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0185	8508	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0186	8508	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0187	8507	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0188	8510	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0189	8511	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0190	8508	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0191	8514	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0192	8503	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0193	8491	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0194	8488	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0195	8490	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0196	8465	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0197	8500	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0198	8510	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0199	8528	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0200	8532	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0201	8528	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0202	8525	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0203	8524	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0204	8528	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0205	8509	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0206	8501	1	0	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0207	8498	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0208	8522	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0209	8490	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0210	8491	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0211	8503	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0212	8523	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39C_chr18_24009754_24140600	0/0	t0001	3144	40	0	11	21	2	6	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/1	t0002	3143	37	3	13	15	2	3	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0003	3144	31	9	8	10	3	1	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0004	3137	20	9	4	7	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0005	3140	18	4	0	11	0	3	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0006	3141	16	4	0	11	0	1	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0007	3145	13	4	3	6	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0008	3136	13	0	1	10	0	2	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0009	3144	7	0	0	7	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0010	3149	7	2	2	0	1	2	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0011	3145	6	0	0	6	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0012	3143	6	3	3	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0013	3135	6	6	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0014	3145	6	0	0	4	0	2	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0015	3145	6	2	2	2	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0016	3141	6	3	1	0	0	2	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0017	3146	5	0	0	4	1	0	copy fasta	TTC39C	chr18	24009754	24140600