JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC39C_chr18_24009754_24140600	0/0	t0018	3147	4	1	0	0	0	3	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0019	3142	4	4	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0020	3145	3	2	0	0	0	1	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0021	3146	3	1	0	0	0	2	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0022	3143	3	0	3	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	1/0	t0023	3145	3	2	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0024	3145	3	3	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0025	3145	3	3	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0026	3142	3	2	1	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0027	3138	3	0	0	3	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0028	3143	2	0	0	2	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0029	3135	2	2	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0030	3136	2	2	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0031	3143	2	0	0	1	1	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0032	3145	2	0	0	1	0	1	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0033	3144	2	2	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0034	3142	2	1	0	1	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0035	3143	2	2	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0036	3144	2	2	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0037	3136	1	0	1	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0038	3134	1	0	0	1	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0039	3144	1	0	0	1	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0040	3144	1	0	0	1	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0041	3146	1	0	0	1	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0042	3149	1	0	0	1	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0043	3135	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0044	3146	1	0	0	0	0	1	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0045	3148	1	0	1	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0046	3138	1	0	0	0	0	1	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0047	3144	1	0	1	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0048	3136	1	0	1	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0049	3143	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0050	3144	1	0	1	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0051	3145	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0052	3145	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0053	3136	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0054	3137	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0055	3143	1	0	0	1	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0056	3144	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0057	3145	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0058	3146	1	0	0	1	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0059	3148	1	0	0	0	0	1	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0060	3143	1	0	0	0	0	1	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0061	3142	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0062	3145	1	0	0	1	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0063	3144	1	0	0	1	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0064	3157	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0065	3137	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0066	3137	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0067	3138	1	0	0	0	0	1	copy fasta	TTC39C	chr18	24009754	24140600