JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC39C_chr18_24009754_24140600	0/0	t0068	3136	1	0	0	1	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0069	3144	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0070	3144	1	0	1	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC39C_chr18_24009754_24140600	0/0	t0071	3157	1	1	0	0	0	0	copy fasta	TTC39C	chr18	24009754	24140600
TTC3_chr21_37068254_37208107	0/1	t0001	1768	115	18	25	59	5	7	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0002	1765	103	15	15	58	4	11	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0003	1765	33	9	14	10	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0004	1765	25	10	6	9	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0005	1762	11	9	2	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0006	1768	10	4	3	2	0	1	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0007	1752	7	7	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0008	1768	7	2	4	0	1	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	1/0	t0009	1765	6	0	3	2	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0010	1762	5	5	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0011	1771	4	4	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0012	1768	2	0	0	2	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0013	1765	1	0	0	1	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0014	1783	1	0	0	0	0	1	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0015	1765	1	0	1	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0016	1752	1	1	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0017	1768	1	0	0	1	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0018	1768	1	0	1	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0019	1768	1	1	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0020	1768	1	0	0	0	0	1	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0021	1768	1	0	0	0	0	1	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0022	1768	1	1	0	0	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0023	1768	1	0	0	1	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC3_chr21_37068254_37208107	0/0	t0024	1771	1	0	0	1	0	0	copy fasta	TTC3	chr21	37068254	37208107
TTC4_chr1_54710861_54747657	0/1	t0001	1193	232	24	44	139	5	19	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	1/0	t0002	1193	83	33	28	2	7	12	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	t0003	1188	71	23	4	34	1	9	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	t0004	1193	4	4	0	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	t0005	1188	2	2	0	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	t0006	1193	2	1	0	0	1	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	t0007	1193	2	2	0	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	t0008	1188	1	1	0	0	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC4_chr1_54710861_54747657	0/0	t0009	1193	1	0	0	1	0	0	copy fasta	TTC4	chr1	54710861	54747657
TTC5_chr14_20281227_20310951	0/0	t0001	3413	115	10	17	72	5	11	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0002	3417	49	0	10	33	0	6	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0003	3416	39	8	8	19	1	3	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0004	3417	35	7	8	13	0	7	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	1/0	t0005	3415	26	0	1	16	1	7	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0006	3412	17	3	8	5	0	1	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0007	3416	11	8	1	0	0	2	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0008	3417	10	10	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/1	t0009	3412	9	2	4	0	1	1	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0010	3417	8	0	0	8	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0011	3417	8	8	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0012	3413	6	4	2	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0013	3411	6	6	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951