JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USF1_chr1_161034251_161050977	0/0	t0006	875	12	0	1	11	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0007	873	9	8	1	0	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0008	873	9	0	2	4	2	1	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0009	871	5	0	2	2	0	1	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0010	875	3	3	0	0	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0011	875	3	0	1	1	0	1	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0012	873	3	2	1	0	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0013	874	3	0	0	3	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0014	876	2	0	0	2	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0015	875	2	0	0	1	0	1	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0016	875	2	0	0	0	1	1	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0017	876	2	0	0	2	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0018	847	2	0	2	0	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0019	875	2	0	0	0	0	2	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0020	876	1	1	0	0	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0021	864	1	0	0	0	0	1	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0022	876	1	0	0	1	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0023	875	1	0	1	0	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0024	871	1	1	0	0	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0025	853	1	0	1	0	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0026	874	1	1	0	0	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0027	875	1	0	0	1	0	0	copy fasta	USF1	chr1	161034251	161050977
USF1_chr1_161034251_161050977	0/0	t0028	871	1	1	0	0	0	0	copy fasta	USF1	chr1	161034251	161050977
USF2_chr19_35263962_35284821	1/0	t0001	706	229	47	44	109	6	22	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0002	706	89	21	13	47	1	7	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0003	706	29	7	5	6	3	8	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0004	707	13	0	4	9	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0005	707	12	2	3	3	1	3	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/1	t0006	702	12	1	1	8	0	1	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0007	702	9	9	0	0	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0008	711	8	0	3	5	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0009	707	6	1	1	4	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0010	701	3	1	0	1	0	1	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0011	707	2	1	0	1	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0012	707	2	1	1	0	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0013	706	2	2	0	0	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0014	702	2	2	0	0	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0015	708	1	0	0	1	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0016	706	1	0	0	1	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0017	697	1	1	0	0	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0018	703	1	0	0	1	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0019	707	1	1	0	0	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0020	707	1	0	1	0	0	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0021	706	1	0	0	0	1	0	copy fasta	USF2	chr19	35263962	35284821
USF2_chr19_35263962_35284821	0/0	t0022	702	1	1	0	0	0	0	copy fasta	USF2	chr19	35263962	35284821
USF3_chr3_113643385_113701642	0/0	t0001	6957	53	8	10	26	4	5	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0002	6969	49	2	5	37	0	5	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0003	6967	42	0	13	21	2	6	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0004	6965	21	0	0	15	1	5	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	1/0	t0005	6967	12	4	2	3	2	0	copy fasta	USF3	chr3	113643385	113701642