JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USF3_chr3_113643385_113701642	0/0	t0006	6953	7	6	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0007	6967	7	5	2	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0008	6958	6	1	1	4	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0009	6968	6	5	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0010	6972	5	0	3	2	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0011	6967	5	5	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0012	6964	5	0	0	5	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0013	6956	4	0	1	2	1	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0014	6965	4	0	0	4	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0015	6971	4	0	3	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0016	6969	4	0	0	1	0	3	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0017	6968	4	0	0	4	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0018	6966	4	4	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0019	6954	3	3	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0020	6955	3	3	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0021	6969	3	0	0	2	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0022	6967	3	3	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0023	6957	2	1	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0024	6967	2	0	0	2	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0025	6964	2	0	0	2	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0026	6964	2	0	1	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0027	6967	2	0	1	0	1	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0028	6969	2	0	0	2	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0029	6969	2	0	0	2	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0030	6967	2	0	1	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0031	6967	2	1	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0032	6969	2	2	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0033	6967	2	2	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0034	6969	2	1	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0035	6967	2	0	0	0	0	2	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0036	6968	2	2	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0037	6972	2	0	1	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0038	6970	2	1	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0039	6971	2	2	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0040	6969	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0041	6970	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0042	6953	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0043	6955	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0044	6967	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0045	6953	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0046	6955	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0047	6957	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0048	6958	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0049	6958	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0050	6971	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0051	6957	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0052	6967	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0053	6966	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0054	6972	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0055	6955	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642