JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USF3_chr3_113643385_113701642	0/0	t0056	6967	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0057	6965	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0058	6968	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0059	6969	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0060	6968	1	0	0	0	1	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0061	6970	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0062	6968	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0063	6967	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0064	6967	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0065	6967	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0066	6967	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0067	6969	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0068	6965	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0069	6967	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0070	6969	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0071	6969	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0072	6969	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0073	6971	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0074	6967	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0075	6971	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0076	6970	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0077	6967	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0078	6968	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0079	6966	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0080	6968	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0081	6970	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0082	6970	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0083	6966	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0084	6970	1	0	0	0	0	1	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/1	t0085	6968	1	0	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0086	6968	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0087	6972	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0088	6991	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0089	6983	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0090	6966	1	0	1	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0091	6979	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0092	6973	1	1	0	0	0	0	copy fasta	USF3	chr3	113643385	113701642
USF3_chr3_113643385_113701642	0/0	t0093	6969	1	0	0	1	0	0	copy fasta	USF3	chr3	113643385	113701642
USH1C_chr11_17488900_17549416	0/0	t0001	546	218	52	43	96	7	20	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0002	546	106	22	18	47	5	14	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0003	542	14	1	3	9	0	1	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0004	546	3	3	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0005	546	3	2	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0006	546	2	2	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0007	546	2	0	0	2	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0008	546	2	2	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0009	542	2	2	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0010	546	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0011	546	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	t0012	546	1	0	0	0	0	1	copy fasta	USH1C	chr11	17488900	17549416