JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP12_chr13_27061156_27176811	0/0	t0004	3298	10	10	0	0	0	0	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0005	3300	8	5	1	1	0	1	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0006	3300	8	0	4	0	2	2	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0007	3300	7	5	1	0	0	1	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0008	3300	4	3	1	0	0	0	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0009	3300	2	0	2	0	0	0	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0010	3300	1	1	0	0	0	0	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0011	3300	1	0	0	0	0	1	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0012	3300	1	1	0	0	0	0	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0013	3300	1	0	0	0	0	1	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0014	3300	1	1	0	0	0	0	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0015	3298	1	1	0	0	0	0	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0016	3300	1	0	1	0	0	0	copy fasta	USP12	chr13	27061156	27176811
USP12_chr13_27061156_27176811	0/0	t0017	3300	1	0	1	0	0	0	copy fasta	USP12	chr13	27061156	27176811
USP13_chr3_179648040_179794401	1/1	t0001	5447	116	18	27	52	2	15	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0002	5444	42	0	5	25	4	8	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0003	5447	25	6	6	13	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0004	5447	17	15	2	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0005	5447	15	15	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0006	5448	14	5	5	0	1	3	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0007	5444	11	3	6	0	1	1	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0008	5447	8	3	4	0	0	1	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0009	5448	6	0	1	0	0	5	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0010	5444	5	4	1	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0011	5447	4	0	0	4	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0012	5447	3	0	0	0	0	3	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0013	5449	2	0	0	0	0	2	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0014	5447	2	2	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0015	5444	2	2	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0016	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0017	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0018	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0019	5448	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0020	5444	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0021	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0022	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0023	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0024	5447	1	0	1	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0025	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0026	5447	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0027	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0028	5447	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0029	5447	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0030	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0031	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0032	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0033	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0034	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0035	5445	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0036	5444	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401