JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP13_chr3_179648040_179794401	0/0	t0037	5444	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0038	5447	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0039	5447	1	1	0	0	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0040	5447	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0041	5444	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0042	5447	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP13_chr3_179648040_179794401	0/0	t0043	5447	1	0	0	1	0	0	copy fasta	USP13	chr3	179648040	179794401
USP14_chr18_153557_219629	1/0	t0001	3488	115	24	19	59	5	7	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0002	3503	35	0	5	30	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0003	3492	29	10	11	0	0	8	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0004	3499	18	2	4	6	1	5	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0005	3503	16	3	0	6	3	4	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0006	3507	14	0	0	14	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0007	3487	11	0	4	0	1	6	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0008	3503	8	0	3	2	0	3	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0009	3495	8	0	0	8	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0010	3493	7	6	0	0	1	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0011	3488	7	7	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0012	3499	7	0	3	4	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/1	t0013	3492	6	1	1	1	0	2	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0014	3490	5	5	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0015	3492	5	5	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0016	3486	5	0	4	0	1	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0017	3504	5	0	4	1	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0018	3491	4	0	1	0	2	1	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0019	3499	4	0	0	4	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0020	3487	4	1	0	0	0	3	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0021	3507	4	0	0	2	0	2	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0022	3492	3	3	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0023	3490	3	0	3	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0024	3496	3	2	1	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0025	3503	3	0	3	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0026	3501	2	2	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0027	3496	2	2	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0028	3488	2	2	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0029	3496	2	2	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0030	3503	2	0	0	0	0	2	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0031	3503	2	0	2	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0032	3499	2	2	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0033	3491	2	0	0	2	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0034	3495	2	0	2	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0035	3492	2	0	0	0	0	2	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0036	3512	1	0	0	0	0	1	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0037	3496	1	0	1	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0038	3488	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0039	3487	1	0	1	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0040	3500	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0041	3496	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0042	3491	1	0	1	0	0	0	copy fasta	USP14	chr18	153557	219629
USP14_chr18_153557_219629	0/0	t0043	3502	1	1	0	0	0	0	copy fasta	USP14	chr18	153557	219629