JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP15_chr12_62255404_62421389	0/0	t0028	12026	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0029	12026	1	0	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0030	12026	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0031	12024	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0032	12025	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0033	12026	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0034	12026	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0035	12026	1	0	0	0	0	1	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0036	11995	1	0	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0037	12025	1	0	0	0	0	1	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0038	12026	1	0	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0039	12026	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0040	12026	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0041	12026	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0042	12046	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0043	12026	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0044	12023	1	0	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0045	12027	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0046	12032	1	0	0	0	0	1	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0047	12027	1	0	0	0	1	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0048	12027	1	0	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0049	12027	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0050	12027	1	0	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0051	12028	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0052	12026	1	0	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0053	12045	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0054	12045	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0055	12027	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0056	12045	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0057	12045	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0058	12028	1	0	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0059	12045	1	0	0	1	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0060	12026	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0061	12026	1	0	1	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0062	12026	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0063	12026	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0064	12026	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP15_chr12_62255404_62421389	0/0	t0065	12027	1	1	0	0	0	0	copy fasta	USP15	chr12	62255404	62421389
USP16_chr21_29019668_29059488	1/1	t0001	453	426	98	76	200	12	38	copy fasta	USP16	chr21	29019668	29059488
USP17L2_chr8_12131435_12143849	0/0	t0000	0	17	12	0	2	0	3	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0001	823	70	10	18	35	2	5	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0002	823	62	3	7	48	1	3	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0003	823	24	9	5	6	0	4	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0004	823	6	5	1	0	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0005	823	4	3	0	0	0	1	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0006	823	2	0	2	0	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	1/0	t0007	823	1	0	0	0	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0008	823	1	0	0	0	0	1	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0009	823	1	0	0	1	0	0	copy fasta	USP17L2	chr8	12131435	12143849
USP17L2_chr8_12131435_12143849	0/0	t0010	823	1	0	0	1	0	0	copy fasta	USP17L2	chr8	12131435	12143849