JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP51_chrX_55479616_55494848	0/0	t0004	2508	7	7	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	1/0	t0005	2508	6	5	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0006	2508	6	5	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0007	2507	6	0	2	3	0	1	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0008	2508	5	4	1	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0009	2508	5	2	2	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0010	2507	3	0	1	1	1	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0011	2509	1	0	0	0	0	1	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0012	2508	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0013	2506	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0014	2508	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0015	2509	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0016	2509	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0017	2507	1	0	1	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0018	2509	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0019	2507	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0020	2508	1	0	0	0	0	1	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0021	2509	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0022	2509	1	0	1	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0023	2508	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0024	2508	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0025	2508	1	0	1	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0026	2507	1	0	0	1	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0027	2508	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0028	2508	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0029	2508	1	1	0	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP51_chrX_55479616_55494848	0/0	t0030	2508	1	0	1	0	0	0	copy fasta	USP51	chrX	55479616	55494848
USP53_chr4_119207713_119300518	0/0	t0001	3411	97	13	23	51	2	8	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0002	3411	68	14	10	31	4	9	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0003	3410	35	2	8	18	1	6	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0004	3409	25	3	6	16	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0005	3410	16	1	2	11	1	1	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	1/0	t0006	3410	15	1	0	12	0	1	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0007	3409	15	4	6	4	1	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/1	t0008	3411	13	1	3	0	5	3	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0009	3412	12	11	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0010	3410	9	8	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0011	3411	8	0	0	7	0	1	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0012	3411	6	0	0	5	0	1	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0013	3410	6	4	1	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0014	3411	5	2	1	0	1	1	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0015	3412	4	0	0	0	0	4	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0016	3410	4	4	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0017	3412	4	3	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0018	3412	3	1	0	1	0	1	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0019	3409	3	3	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0020	3412	3	1	0	2	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0021	3411	3	0	0	3	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0022	3412	2	2	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0023	3410	2	2	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518