JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP53_chr4_119207713_119300518	0/0	t0024	3410	2	2	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0025	3409	2	0	2	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0026	3410	2	2	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0027	3411	1	0	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0028	3410	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0029	3410	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0030	3411	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0031	3411	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0032	3410	1	0	0	0	1	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0033	3409	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0034	3410	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0035	3410	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0036	3409	1	0	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0037	3410	1	0	1	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0038	3409	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0039	3409	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0040	3409	1	1	0	0	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0041	3410	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP53_chr4_119207713_119300518	0/0	t0042	3411	1	0	0	1	0	0	copy fasta	USP53	chr4	119207713	119300518
USP54_chr10_73492538_73596342	1/1	t0001	1738	156	37	15	84	0	18	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0002	1738	16	14	2	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0003	1738	8	6	2	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0004	1738	3	0	0	1	0	2	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0005	1738	2	0	0	0	0	2	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0006	1738	2	0	0	0	0	2	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0007	1736	2	2	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0008	1738	2	2	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0009	1738	1	1	0	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0010	1738	1	0	1	0	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0011	1738	1	0	0	0	0	1	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0012	1738	1	0	0	1	0	0	copy fasta	USP54	chr10	73492538	73596342
USP54_chr10_73492538_73596342	0/0	t0013	1738	1	0	0	0	0	1	copy fasta	USP54	chr10	73492538	73596342
USP5_chr12_6847150_6871632	1/1	t0001	586	292	82	60	98	14	36	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	t0002	586	83	4	5	66	2	6	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	t0003	586	9	1	3	3	0	2	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	t0004	586	5	0	0	5	0	0	copy fasta	USP5	chr12	6847150	6871632
USP5_chr12_6847150_6871632	0/0	t0005	586	1	1	0	0	0	0	copy fasta	USP5	chr12	6847150	6871632
USP6NL_chr10_11455510_11616650	0/0	t0001	2217	83	9	8	60	1	5	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0002	2223	50	11	22	10	5	2	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0003	2222	48	1	13	31	1	2	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0004	2229	21	3	1	13	1	3	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0005	2227	21	2	7	7	4	1	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0006	2221	18	10	3	1	0	4	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0007	2225	17	0	2	13	0	2	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0008	2231	13	0	2	11	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0009	2217	9	8	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0010	2225	8	2	2	2	0	2	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0011	2233	7	1	0	5	0	1	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0012	2223	7	1	1	4	0	1	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	t0013	2222	7	0	2	5	0	0	copy fasta	USP6NL	chr10	11455510	11616650