JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VANGL1_chr1_115636970_115703221	0/0	t0026	7097	2	0	0	2	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0027	7097	2	0	0	2	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0028	7096	2	2	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0029	7096	2	2	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0030	7097	2	2	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0031	7098	2	0	0	0	0	2	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0032	7097	1	0	1	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0033	7096	1	0	0	0	1	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0034	7096	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0035	7096	1	0	0	0	0	1	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0036	7096	1	0	1	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0037	7096	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0038	7098	1	0	0	0	0	1	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0039	7098	1	0	1	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0040	7098	1	1	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0041	7096	1	1	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0042	7096	1	0	1	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0043	7096	1	0	1	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0044	7096	1	0	0	0	0	1	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0045	7092	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0046	7096	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0047	7097	1	1	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0048	7097	1	0	0	0	0	1	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0049	7097	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0050	7097	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0051	7097	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0052	7096	1	1	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0053	7096	1	1	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0054	7096	1	1	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0055	7097	1	1	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0056	7097	1	1	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0057	7375	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0058	7097	1	1	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0059	7097	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0060	7098	1	0	0	1	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0061	7096	1	1	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL2_chr1_160395564_160433670	0/0	t0001	3790	118	43	12	52	3	8	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/1	t0002	3789	108	3	23	63	5	13	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0003	3795	41	0	6	30	1	4	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0004	3798	17	7	2	3	1	4	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0005	3793	14	10	3	0	1	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0006	3795	9	1	4	2	0	2	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0007	3790	7	7	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0008	3789	6	1	4	0	1	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0009	3792	6	1	5	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0010	3797	6	0	0	6	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0011	3790	4	4	0	0	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0012	3790	3	0	0	0	0	3	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0013	3789	3	0	0	3	0	0	copy fasta	VANGL2	chr1	160395564	160433670
VANGL2_chr1_160395564_160433670	0/0	t0014	3790	3	0	0	0	0	3	copy fasta	VANGL2	chr1	160395564	160433670