JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VAPA_chr18_9909016_9965021	0/0	t0016	6052	4	0	3	0	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0017	6054	4	0	0	4	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0018	6055	4	0	1	0	0	3	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0019	6054	4	0	0	4	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0020	6053	3	3	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0021	6052	3	2	0	0	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0022	6052	3	0	0	3	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0023	6053	3	1	0	2	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0024	6052	3	0	0	0	1	2	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0025	6051	3	0	0	2	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0026	6054	2	0	0	2	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0027	6047	2	2	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0028	6051	2	0	1	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0029	6053	2	1	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0030	6052	2	2	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0031	6047	2	0	0	2	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0032	6049	2	2	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0033	6053	2	2	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0034	6053	2	2	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0035	6055	2	0	0	2	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0036	6053	2	2	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0037	6055	2	2	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0038	6054	2	1	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0039	6052	2	0	1	0	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0040	6052	2	0	1	0	1	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0041	6053	2	0	0	2	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0042	6052	2	0	2	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0043	6052	2	1	0	0	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0044	6053	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0045	6052	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0046	6047	1	0	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0047	6054	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0048	6052	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0049	6051	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0050	6044	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0051	6047	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0052	6051	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0053	6054	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0054	6051	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0055	6053	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0056	6054	1	0	0	0	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0057	6053	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0058	6052	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0059	6052	1	0	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0060	6053	1	0	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0061	6047	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0062	6055	1	0	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0063	6052	1	0	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0064	6054	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0065	6052	1	0	0	0	0	1	copy fasta	VAPA	chr18	9909016	9965021