JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VAPA_chr18_9909016_9965021	0/0	t0066	6052	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0067	6056	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0068	6054	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0069	6050	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0070	6050	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0071	6052	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0072	6051	1	0	0	0	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0073	6053	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0074	6052	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0075	6055	1	0	0	0	1	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0076	6048	1	0	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0077	6052	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0078	6053	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0079	6054	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0080	6051	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0081	6052	1	0	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0082	6053	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0083	6054	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0084	6053	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0085	6048	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0086	6047	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0087	6048	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0088	6050	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0089	6054	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0090	6054	1	0	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0091	6048	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0092	6054	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0093	6054	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0094	6053	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0095	6053	1	0	0	0	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0096	6053	1	0	0	0	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0097	6054	1	0	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0098	6053	1	0	1	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0099	6053	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0100	6046	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0101	6051	1	0	0	1	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0102	6049	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0103	6051	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0104	6052	1	0	0	0	0	1	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0105	6051	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0106	6051	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0107	6052	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0108	6051	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0109	6054	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPA_chr18_9909016_9965021	0/0	t0110	6053	1	1	0	0	0	0	copy fasta	VAPA	chr18	9909016	9965021
VAPB_chr20_58384229_58456101	0/0	t0001	7088	60	4	9	44	0	3	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0002	7072	54	3	3	37	1	10	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0003	7090	52	8	10	25	1	8	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	1/0	t0004	7098	15	0	9	5	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0005	7073	15	6	5	1	2	1	copy fasta	VAPB	chr20	58384229	58456101