JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VWC2_chr7_49768638_49926950	0/0	t0060	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0061	10349	1	0	0	0	0	1	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0062	10349	1	0	0	0	0	1	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0063	10345	1	0	1	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0064	10345	1	0	1	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	1/0	t0065	10345	1	0	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0066	10343	1	0	0	0	0	1	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0067	10349	1	0	0	1	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0068	10350	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0069	10349	1	0	0	1	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWCE_chr11_61253286_61300316	1/1	t0001	669	183	79	32	45	10	15	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	t0002	654	2	2	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	t0003	669	1	0	0	0	0	1	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	t0004	669	1	1	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	t0005	669	1	1	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	t0006	669	1	0	0	1	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWCE_chr11_61253286_61300316	0/0	t0007	669	1	1	0	0	0	0	copy fasta	VWCE	chr11	61253286	61300316
VWDE_chr7_12325885_12408865	0/0	t0001	447	97	8	28	50	5	6	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	1/0	t0002	448	95	5	18	47	8	16	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/1	t0003	448	73	28	14	20	2	8	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0004	447	50	2	3	38	1	6	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0005	448	24	21	3	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0006	448	13	11	1	1	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0007	448	7	7	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0008	448	5	4	1	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0009	448	3	3	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0010	448	2	2	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0011	150	1	0	1	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0012	447	1	0	1	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0013	448	1	1	0	0	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0014	448	1	0	0	1	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWDE_chr7_12325885_12408865	0/0	t0015	448	1	0	0	1	0	0	copy fasta	VWDE	chr7	12325885	12408865
VWF_chr12_5943877_6129670	1/1	t0001	389	288	96	52	94	8	36	copy fasta	VWF	chr12	5943877	6129670
VXN_chr8_66488566_66523524	1/1	t0001	2532	234	58	60	76	13	25	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0002	2532	48	7	4	36	0	1	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0003	2532	23	16	2	3	0	2	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0004	2532	8	5	1	2	0	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0005	2532	5	5	0	0	0	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0006	2532	3	0	2	0	1	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0007	2532	2	0	0	2	0	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0008	2532	2	0	0	2	0	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0009	2532	1	0	0	1	0	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0010	2532	1	1	0	0	0	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0011	2532	1	0	0	0	0	1	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0012	2532	1	0	0	0	0	1	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0013	2532	1	0	0	1	0	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0014	2532	1	0	1	0	0	0	copy fasta	VXN	chr8	66488566	66523524
VXN_chr8_66488566_66523524	0/0	t0015	2532	1	0	0	1	0	0	copy fasta	VXN	chr8	66488566	66523524
WAC_chr10_28528118_28628112	0/0	t0001	3968	16	5	4	5	0	2	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0002	3965	14	3	3	5	0	3	copy fasta	WAC	chr10	28528118	28628112