JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR13_chrX_48592492_48613869	0/0	t0104	4002	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0105	4002	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0106	4004	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0107	3995	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0108	3999	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0109	4001	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0110	4001	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR17_chr4_176060841_176187815	0/0	t0001	3477	58	3	13	36	2	4	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0002	3476	45	3	11	23	0	8	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/1	t0003	3475	34	1	6	18	1	7	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0004	3476	31	3	4	20	2	2	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0005	3476	19	8	4	5	0	2	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0006	3474	17	0	2	12	2	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0007	3474	15	0	0	15	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0008	3474	14	2	0	11	0	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0009	3477	13	3	0	9	1	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0010	3481	9	7	2	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0011	3475	8	0	3	3	1	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0012	3477	7	7	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0013	3476	6	6	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0014	3477	5	5	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0015	3475	5	1	0	2	0	2	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0016	3476	5	0	2	2	0	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0017	3481	5	5	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0018	3476	4	3	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0019	3485	4	2	2	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0020	3470	4	1	0	0	0	3	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0021	3480	3	3	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0022	3482	3	0	1	0	0	2	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0023	3480	3	3	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0024	3482	2	1	0	0	0	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0025	3477	2	0	1	0	1	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0026	3476	2	2	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0027	3484	2	0	0	0	1	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0028	3475	2	0	2	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0029	3477	2	0	2	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0030	3477	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0031	3482	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0032	3476	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0033	3476	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0034	3486	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0035	3484	1	0	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0036	3482	1	0	0	0	0	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0037	3476	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0038	3475	1	0	1	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0039	3477	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0040	3476	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0041	3475	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0042	3474	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0043	3479	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815