JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR17_chr4_176060841_176187815	0/0	t0044	3480	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0045	3476	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0046	3476	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0047	3476	1	0	0	0	0	1	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0048	3484	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0049	3476	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0050	3477	1	0	0	1	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0051	3474	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0052	3477	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0053	3477	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0054	3479	1	0	0	0	1	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	0/0	t0055	3476	1	1	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR17_chr4_176060841_176187815	1/0	t0056	3482	1	0	0	0	0	0	copy fasta	WDR17	chr4	176060841	176187815
WDR18_chr19_979345_999557	1/1	t0001	223	372	84	77	160	15	34	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	t0002	223	48	11	0	32	0	5	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	t0003	223	28	0	2	15	3	8	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	t0004	223	6	1	3	1	0	1	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	t0005	223	1	0	0	1	0	0	copy fasta	WDR18	chr19	979345	999557
WDR18_chr19_979345_999557	0/0	t0006	223	1	0	0	1	0	0	copy fasta	WDR18	chr19	979345	999557
WDR19_chr4_39177529_39290810	0/0	t0001	367	154	37	27	72	4	14	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	1/1	t0002	367	113	18	23	50	4	16	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	t0003	367	21	19	2	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	t0004	371	4	0	0	4	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	t0005	367	1	1	0	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR19_chr4_39177529_39290810	0/0	t0006	367	1	1	0	0	0	0	copy fasta	WDR19	chr4	39177529	39290810
WDR1_chr4_10069339_10121799	1/0	t0001	1173	172	56	25	68	7	15	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0002	1173	96	18	15	53	1	9	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0003	1173	46	7	10	23	3	3	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0004	1173	36	7	12	3	4	10	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0005	1174	24	2	5	11	2	4	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0006	1173	14	0	0	14	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0007	1173	6	5	0	1	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/1	t0008	1174	4	0	2	0	1	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0009	1173	3	0	3	0	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0010	1173	2	0	0	2	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0011	1173	2	1	1	0	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0012	1173	2	2	0	0	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0013	1173	1	0	0	1	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0014	1173	1	0	0	0	0	1	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0015	1173	1	0	0	0	0	1	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0016	1173	1	0	0	0	0	1	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0017	1173	1	0	0	0	0	1	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0018	1173	1	0	0	0	0	1	copy fasta	WDR1	chr4	10069339	10121799
WDR1_chr4_10069339_10121799	0/0	t0019	1173	1	0	1	0	0	0	copy fasta	WDR1	chr4	10069339	10121799
WDR20_chr14_102134897_102215527	1/1	t0001	675	250	90	54	71	8	25	copy fasta	WDR20	chr14	102134897	102215527
WDR20_chr14_102134897_102215527	0/0	t0002	675	14	0	0	13	0	1	copy fasta	WDR20	chr14	102134897	102215527
WDR24_chr16_679622_695398	1/0	t0001	871	368	87	74	144	12	50	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	t0002	871	4	4	0	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	t0003	871	2	2	0	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	t0004	871	1	1	0	0	0	0	copy fasta	WDR24	chr16	679622	695398