JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNT16_chr7_121324000_121346104	0/0	t0003	2057	25	5	16	0	3	1	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0004	2057	3	3	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0005	2053	1	0	0	1	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0006	2053	1	0	0	0	0	1	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0007	2057	1	0	0	0	0	1	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0008	2057	1	1	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0009	2053	1	0	0	1	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0010	2053	1	1	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0011	2053	1	0	0	1	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0012	2053	1	0	0	1	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0013	2053	1	1	0	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0014	2053	1	0	0	1	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0015	2053	1	0	1	0	0	0	copy fasta	WNT16	chr7	121324000	121346104
WNT1_chr12_48973322_48987620	1/1	t0001	1310	357	66	66	167	14	42	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	t0002	1310	13	10	3	0	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	t0003	1310	10	9	1	0	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	t0004	1309	4	0	4	0	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	t0005	1310	3	3	0	0	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	t0006	1310	2	2	0	0	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	t0007	1310	2	0	0	2	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	t0008	1310	1	0	0	0	1	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	t0009	1321	1	0	0	1	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	t0010	1310	1	0	0	0	1	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	t0011	1310	1	1	0	0	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT1_chr12_48973322_48987620	0/0	t0012	1310	1	1	0	0	0	0	copy fasta	WNT1	chr12	48973322	48987620
WNT2B_chr1_112503965_112535165	1/0	t0001	9955	77	18	13	31	5	9	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0002	9949	67	1	14	46	2	4	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0003	9951	29	2	1	25	0	1	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0004	9951	18	1	4	9	1	3	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0005	9949	15	3	1	8	1	2	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0006	9954	12	0	1	11	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0007	9950	12	0	0	12	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0008	9955	11	1	0	7	0	3	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0009	9948	8	0	8	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0010	9956	7	3	0	4	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0011	9951	6	6	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0012	9955	6	6	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0013	9948	6	0	3	3	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0014	9934	4	4	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0015	9955	4	0	0	4	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0016	9951	4	0	3	0	0	1	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0017	9951	4	0	3	0	1	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0018	9948	4	0	1	3	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0019	9952	4	4	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0020	9954	3	0	2	0	1	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0021	9955	3	3	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0022	9934	2	2	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0023	9951	2	0	0	2	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0024	9950	2	2	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0025	9950	2	0	1	0	1	0	copy fasta	WNT2B	chr1	112503965	112535165