JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNT2B_chr1_112503965_112535165	0/0	t0076	9955	1	0	0	1	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0077	9954	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0078	9950	1	0	0	1	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0079	9955	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0080	9955	1	0	0	0	0	1	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0081	9955	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0082	9955	1	0	0	0	0	1	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0083	9955	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0084	9956	1	0	0	1	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0085	9949	1	0	0	0	0	1	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0086	9949	1	0	0	0	1	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0087	9950	1	0	0	1	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0088	9952	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0089	9951	1	0	0	0	0	1	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0090	9950	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0091	9955	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0092	9951	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0093	9954	1	0	1	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0094	9949	1	0	1	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0095	9954	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0096	9949	1	0	0	1	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0097	9949	1	0	1	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0098	9949	1	0	0	1	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0099	9949	1	0	0	1	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0100	9949	1	0	0	1	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0101	9951	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2B_chr1_112503965_112535165	0/0	t0102	9952	1	1	0	0	0	0	copy fasta	WNT2B	chr1	112503965	112535165
WNT2_chr7_117270451_117328058	0/0	t0001	2775	74	24	13	27	2	8	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0002	2774	70	3	12	44	1	10	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0003	2774	67	2	9	47	1	8	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0004	2774	22	7	10	1	2	2	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	1/0	t0005	2774	10	3	2	0	1	3	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0006	2775	9	9	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/1	t0007	2775	6	0	4	0	0	1	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0008	2774	4	3	0	0	1	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0009	2775	4	4	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0010	2775	4	0	0	4	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0011	2775	4	1	1	0	0	2	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0012	2775	4	4	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0013	2775	3	1	0	2	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0014	2775	3	0	1	0	1	1	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0015	2775	3	2	1	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0016	2775	3	3	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0017	2774	3	0	1	0	2	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0018	2774	2	2	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0019	2775	2	0	1	0	1	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0020	2774	1	0	0	0	0	1	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0021	2774	1	1	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0022	2774	1	1	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0023	2775	1	1	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058