JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WRNIP1_chr6_2760393_2791952	0/0	t0001	1897	104	0	24	74	2	4	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0002	1901	103	42	18	29	4	10	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0003	1897	83	0	14	59	2	8	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0004	1901	59	17	12	18	6	6	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0005	1901	20	12	5	2	0	1	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0006	1897	9	0	0	9	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0007	1897	8	2	1	2	0	3	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0008	1901	7	6	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0009	1897	7	1	2	2	2	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0010	1897	6	1	5	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	1/0	t0011	1901	5	4	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0012	1901	4	0	0	4	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0013	1901	3	3	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0014	1901	3	0	0	3	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0015	1901	2	1	1	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0016	1897	2	0	1	0	0	1	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/1	t0017	1901	2	0	1	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0018	1897	2	0	0	0	0	2	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0019	1889	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0020	1901	1	0	1	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0021	1901	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0022	1901	1	1	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0023	1901	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0024	1897	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0025	1897	1	1	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0026	1897	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0027	1897	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0028	1901	1	1	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0029	1897	1	0	0	1	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0030	1901	1	1	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0031	1897	1	0	1	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0032	1886	1	1	0	0	0	0	copy fasta	WRNIP1	chr6	2760393	2791952
WRNIP1_chr6_2760393_2791952	0/0	t0033	1897	1	0	0	0	0	1	copy fasta	WRNIP1	chr6	2760393	2791952
WRN_chr8_31028810_31181138	0/1	t0001	3281	33	3	10	14	1	4	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0002	3269	31	1	3	26	0	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0003	3273	26	5	5	12	0	4	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0004	3297	20	0	6	10	1	3	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0005	3301	16	0	4	7	0	5	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0006	3293	9	0	0	5	0	4	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0007	3305	7	0	1	4	1	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	1/0	t0008	3277	6	5	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0009	3265	5	5	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0010	3277	5	5	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0011	3277	5	0	2	1	2	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0012	3281	4	4	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0013	3313	3	1	0	0	2	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0014	3277	3	0	0	0	0	3	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0015	3277	3	1	1	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0016	3272	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0017	3279	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138