JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WRN_chr8_31028810_31181138	0/0	t0018	3273	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0019	3277	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0020	3273	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0021	3265	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0022	3269	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0023	3272	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0024	3272	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0025	3297	2	0	1	0	1	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0026	3309	2	0	0	0	2	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0027	3309	2	0	0	0	1	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0028	3313	2	0	1	0	1	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0029	3265	2	0	1	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0030	3289	2	0	0	0	0	2	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0031	3309	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0032	3272	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0033	3305	2	2	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0034	3269	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0035	3277	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0036	3269	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0037	3277	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0038	3285	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0039	3272	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0040	3305	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0041	3313	1	0	1	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0042	3287	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0043	3265	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0044	3277	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0045	3313	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0046	3272	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0047	3304	1	0	1	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0048	3277	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0049	3269	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0050	3275	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0051	3261	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0052	3277	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0053	3285	1	0	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0054	3313	1	0	0	0	1	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0055	3293	1	0	1	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0056	3317	1	0	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0057	3305	1	0	0	0	0	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0058	3325	1	0	1	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0059	3333	1	0	0	0	0	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0060	3321	1	0	0	1	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0061	3317	1	0	0	0	1	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0062	3321	1	0	0	0	0	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0063	3333	1	0	1	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0064	3279	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0065	3275	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0066	3281	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0067	3281	1	0	0	0	0	1	copy fasta	WRN	chr8	31028810	31181138