JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WRN_chr8_31028810_31181138	0/0	t0068	3297	1	0	0	0	0	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0069	3301	1	0	0	0	0	1	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0070	3277	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0071	3277	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0072	3273	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0073	3309	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0074	3317	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0075	3313	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0076	3321	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0077	3333	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0078	3273	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0079	3277	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0080	3297	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0081	3301	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0082	3281	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0083	3277	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0084	3309	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WRN_chr8_31028810_31181138	0/0	t0085	3313	1	1	0	0	0	0	copy fasta	WRN	chr8	31028810	31181138
WSB1_chr17_27289114_27320926	1/0	t0001	3840	120	10	31	62	5	11	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/1	t0002	3840	89	20	25	24	6	13	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0003	3839	16	15	1	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0004	3837	11	11	0	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0005	3836	9	9	0	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0006	3840	7	0	0	7	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0007	3836	7	4	0	1	0	2	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0008	3839	7	1	0	6	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0009	3841	7	0	1	5	0	1	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0010	3841	6	6	0	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0011	3840	6	0	5	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0012	3836	5	5	0	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0013	3840	4	0	0	4	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0014	3840	4	0	3	0	1	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0015	3840	4	0	0	0	0	4	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0016	3840	3	0	0	3	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0017	3839	3	0	0	2	0	1	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0018	3840	2	1	1	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0019	3840	2	1	1	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0020	3841	2	0	2	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0021	3840	2	0	1	0	0	1	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0022	3839	2	2	0	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0023	3839	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0024	3836	1	1	0	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0025	3840	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0026	3840	1	0	1	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0027	3840	1	0	0	0	0	1	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0028	3840	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0029	3840	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0030	3839	1	1	0	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0031	3840	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0032	3839	1	0	1	0	0	0	copy fasta	WSB1	chr17	27289114	27320926