JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB43_chr9_126800040_126843210	0/0	t0035	4537	1	1	0	0	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0036	4536	1	0	0	1	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB43_chr9_126800040_126843210	0/0	t0037	4535	1	0	0	1	0	0	copy fasta	ZBTB43	chr9	126800040	126843210
ZBTB44_chr11_130221677_130319917	0/0	t0001	5694	77	7	17	44	0	9	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/1	t0002	5694	67	11	10	42	1	2	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0003	5693	26	14	9	0	1	2	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0004	5695	11	4	3	3	0	1	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0005	5695	11	0	0	11	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0006	5695	8	0	1	7	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0007	5690	8	7	1	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0008	5692	7	7	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0009	5693	7	1	0	6	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0010	5694	6	2	0	4	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0011	5692	4	3	1	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0012	5694	3	3	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0013	5694	3	1	0	2	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0014	5694	3	3	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0015	5693	3	0	0	3	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0016	5695	2	1	1	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0017	5693	2	2	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0018	5692	2	2	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0019	5692	2	0	1	0	1	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0020	5694	2	0	1	0	1	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0021	5694	2	2	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0022	5694	2	0	2	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0023	5694	2	0	0	2	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0024	5694	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0025	5693	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0026	5694	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0027	5694	1	0	1	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0028	5693	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0029	5693	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0030	5693	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0031	5692	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0032	5693	1	0	1	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0033	5695	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0034	5694	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0035	5694	1	0	0	0	0	1	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0036	5694	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0037	5694	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0038	5694	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0039	5694	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0040	5694	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0041	5694	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0042	5693	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0043	5693	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0044	5693	1	0	0	0	0	1	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0045	5696	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0046	5695	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0047	5694	1	0	1	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917