JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB44_chr11_130221677_130319917	0/0	t0048	5694	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0049	5693	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0050	5694	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0051	5695	1	1	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	0/0	t0052	5694	1	0	0	1	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB44_chr11_130221677_130319917	1/0	t0053	5687	1	0	0	0	0	0	copy fasta	ZBTB44	chr11	130221677	130319917
ZBTB45_chr19_58508530_58524810	1/1	t0001	594	404	90	77	178	17	40	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	t0002	594	4	0	0	4	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	t0003	594	1	0	0	0	1	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB45_chr19_58508530_58524810	0/0	t0004	594	1	0	1	0	0	0	copy fasta	ZBTB45	chr19	58508530	58524810
ZBTB46_chr20_63738670_63836264	0/0	t0001	3462	53	10	16	24	1	2	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0002	3462	46	0	15	18	4	9	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0003	3462	36	1	4	26	1	4	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0004	3462	33	23	5	2	0	3	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0005	3462	27	0	4	18	2	3	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0006	3462	20	8	8	0	1	3	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0007	3462	11	0	2	8	0	1	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0008	3461	9	8	1	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0009	3462	7	3	0	1	0	3	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0010	3462	7	4	0	1	0	2	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0011	3462	6	6	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	1/0	t0012	3462	5	0	3	0	0	1	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0013	3461	5	5	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0014	3462	4	0	2	0	2	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0015	3462	4	0	0	0	0	4	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0016	3462	4	0	4	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0017	3458	3	3	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/1	t0018	3462	3	0	0	1	1	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0019	3458	2	2	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0020	3462	2	0	0	0	2	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0021	3462	2	2	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0022	3462	2	0	0	0	0	2	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0023	3462	2	2	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0024	3461	2	0	2	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0025	3462	2	2	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0026	3462	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0027	3462	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0028	3462	1	0	1	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0029	3462	1	0	1	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0030	3462	1	0	0	1	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0031	3461	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0032	3462	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0033	3461	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0034	3461	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0035	3462	1	0	0	1	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0036	3462	1	0	0	1	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0037	3462	1	0	1	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0038	3461	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0039	3462	1	1	0	0	0	0	copy fasta	ZBTB46	chr20	63738670	63836264
ZBTB46_chr20_63738670_63836264	0/0	t0040	3462	1	0	0	0	0	1	copy fasta	ZBTB46	chr20	63738670	63836264