JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZCRB1_chr12_42307086_42331094	0/0	t0009	1155	1	0	0	1	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	t0010	1155	1	0	1	0	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCRB1_chr12_42307086_42331094	0/0	t0011	1155	1	1	0	0	0	0	copy fasta	ZCRB1	chr12	42307086	42331094
ZCWPW1_chr7_100395872_100433703	1/1	t0001	415	237	77	40	77	7	34	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	t0002	415	60	7	10	33	4	6	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	t0003	415	16	1	4	0	5	6	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	t0004	415	3	0	0	3	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	t0005	415	1	0	0	1	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW1_chr7_100395872_100433703	0/0	t0006	415	1	1	0	0	0	0	copy fasta	ZCWPW1	chr7	100395872	100433703
ZCWPW2_chr3_28343721_28531358	1/0	t0001	2287	54	11	9	22	3	8	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0002	2307	53	7	16	20	2	8	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0003	2307	50	6	15	22	3	4	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/1	t0004	2307	39	4	8	19	2	5	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0005	2287	14	9	1	4	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0006	2307	7	6	1	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0007	2307	5	3	2	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0008	2307	4	1	1	1	0	1	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0009	2307	4	3	1	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0010	2287	3	0	0	3	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0011	2287	2	2	0	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0012	2287	2	0	2	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0013	2307	2	2	0	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0014	2307	2	2	0	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0015	2307	2	2	0	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0016	2287	1	0	0	1	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0017	2287	1	1	0	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0018	2307	1	0	0	1	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0019	2307	1	0	1	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0020	2307	1	0	0	1	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0021	2307	1	0	1	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0022	2307	1	0	1	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0023	2302	1	1	0	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0024	2287	1	1	0	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0025	2307	1	0	1	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZCWPW2_chr3_28343721_28531358	0/0	t0026	2307	1	1	0	0	0	0	copy fasta	ZCWPW2	chr3	28343721	28531358
ZDBF2_chr2_206269663_206319427	1/1	t0001	3221	103	30	16	34	4	17	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0002	3225	79	5	14	42	4	14	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0003	3221	50	7	4	33	2	4	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0004	3223	42	1	11	27	1	2	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0005	3224	25	2	14	4	3	2	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0006	3224	8	7	1	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0007	3223	6	6	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0008	3222	5	0	2	1	1	1	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0009	3223	4	4	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0010	3225	4	4	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0011	3225	4	4	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0012	3225	2	0	2	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0013	3221	2	2	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0014	3225	2	2	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0015	3225	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427