JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDBF2_chr2_206269663_206319427	0/0	t0016	3223	1	0	0	0	1	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0017	3224	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0018	3225	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0019	3221	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0020	3222	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0021	3221	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0022	3221	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0023	3221	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0024	3221	1	0	0	1	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0025	3221	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0026	3224	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0027	3221	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDBF2_chr2_206269663_206319427	0/0	t0028	3222	1	1	0	0	0	0	copy fasta	ZDBF2	chr2	206269663	206319427
ZDHHC11B_chr5_705355_789729	0/0	t0001	2227	32	1	7	19	1	4	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0002	2357	19	0	7	10	1	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0003	2357	19	2	8	7	0	2	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0004	2227	13	0	7	0	2	4	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0005	2357	11	7	2	0	1	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0006	2357	11	1	0	8	1	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0007	2357	10	10	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0008	2227	10	0	4	6	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0009	2357	9	0	1	8	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0010	2357	8	1	1	5	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0011	2611	7	7	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0012	2357	6	0	4	0	0	2	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0013	2357	6	6	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0014	2357	5	1	0	3	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0015	2357	5	0	0	5	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0016	2357	5	5	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0017	2227	4	1	2	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0018	2227	4	0	1	3	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0019	2357	3	3	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0020	2227	3	0	0	2	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0021	2227	3	3	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0022	2357	3	3	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0023	2357	3	0	1	0	0	2	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0024	2357	3	1	1	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	1/0	t0025	2227	3	0	0	2	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0026	2357	3	0	2	0	1	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0027	2206	3	3	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0028	2357	2	0	1	1	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0029	2227	2	2	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0030	2357	2	0	0	2	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0031	2227	2	2	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0032	2227	2	0	1	0	0	1	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0033	2380	2	1	1	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0034	2227	2	0	2	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0035	2357	2	0	0	2	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0036	2357	2	0	0	2	0	0	copy fasta	ZDHHC11B	chr5	705355	789729
ZDHHC11B_chr5_705355_789729	0/0	t0037	2357	2	2	0	0	0	0	copy fasta	ZDHHC11B	chr5	705355	789729