JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF138_chr7_64789428_64838680	0/0	t0017	1620	1	1	0	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0018	1620	1	1	0	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0019	1620	1	0	0	0	0	1	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	1/0	t0020	1620	1	0	0	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0021	1620	1	0	0	1	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0022	1609	1	1	0	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF140_chr12_133075923_133112428	1/1	t0001	976	204	16	46	109	8	23	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0002	976	76	23	24	19	3	7	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0003	976	43	2	4	20	4	13	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0004	976	27	23	3	0	0	1	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0005	976	9	9	0	0	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0006	976	7	4	3	0	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0007	976	5	5	0	0	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0008	974	4	4	0	0	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0009	976	3	0	1	0	0	2	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0010	975	3	3	0	0	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0011	976	2	0	0	0	1	1	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0012	976	2	0	0	0	2	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0013	976	2	2	0	0	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0014	976	1	1	0	0	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0015	976	1	0	0	0	0	1	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0016	976	1	0	0	1	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0017	976	1	0	1	0	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF140_chr12_133075923_133112428	0/0	t0018	976	1	0	0	1	0	0	copy fasta	ZNF140	chr12	133075923	133112428
ZNF141_chr4_332814_389868	0/0	t0001	11178	54	9	7	29	5	4	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0002	11171	37	1	7	23	1	5	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/1	t0003	11179	14	1	2	7	2	1	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0004	11179	11	2	3	5	0	1	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0005	11201	6	0	2	4	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0006	11172	5	0	1	2	0	2	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0007	11173	5	5	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0008	11177	5	5	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0009	11202	4	1	0	2	0	1	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0010	11202	4	1	0	3	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0011	11178	4	0	4	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0012	11180	3	3	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0013	11183	3	3	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0014	11171	3	0	0	0	2	1	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0015	11172	3	3	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0016	11179	3	0	0	0	0	3	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0017	11187	3	0	2	0	1	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0018	11176	3	3	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0019	11178	3	3	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0020	11180	3	1	0	2	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0021	11181	3	0	3	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0022	11201	2	0	2	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0023	11204	2	2	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0024	11199	2	1	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0025	11212	2	0	0	2	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0026	11203	2	0	0	1	1	0	copy fasta	ZNF141	chr4	332814	389868