JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF141_chr4_332814_389868	0/0	t0027	11207	2	0	0	2	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0028	11205	2	0	0	2	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0029	11172	2	0	0	1	1	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0030	11173	2	0	0	1	0	1	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0031	11171	2	0	0	2	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0032	11173	2	1	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0033	11202	2	0	0	0	0	2	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0034	11171	2	2	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0035	11178	2	0	0	0	0	2	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0036	11177	2	0	0	1	0	1	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0037	11177	2	0	0	2	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0038	11179	2	0	0	2	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0039	11178	2	0	0	2	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0040	11176	2	2	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0041	11177	2	2	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0042	11179	2	0	2	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0043	11175	2	2	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0044	11197	1	0	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0045	11198	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0046	11202	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0047	11203	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0048	11210	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0049	11203	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0050	11205	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0051	11203	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0052	11206	1	0	0	0	0	1	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0053	11200	1	0	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0054	11200	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0055	11198	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0056	11199	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0057	11199	1	0	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0058	11199	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0059	11203	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0060	11203	1	0	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0061	11198	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0062	11200	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0063	11201	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0064	11184	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0065	11197	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0066	11206	1	0	0	0	1	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0067	11215	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0068	11201	1	0	0	0	1	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0069	11203	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0070	11213	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0071	11180	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0072	11202	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0073	11202	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0074	11206	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0075	11208	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0076	11203	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868