JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF260_chr19_36505687_36533271	0/0	t0030	4047	1	0	0	1	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF260_chr19_36505687_36533271	0/0	t0031	4047	1	1	0	0	0	0	copy fasta	ZNF260	chr19	36505687	36533271
ZNF263_chr16_3278491_3296460	1/1	t0001	1231	282	40	52	148	11	29	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0002	1229	47	16	18	7	3	3	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0003	1229	28	28	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0004	1228	9	8	1	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0005	1229	3	3	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0006	1231	2	0	0	1	0	1	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0007	1229	1	1	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0008	1231	1	1	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0009	1231	1	1	0	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0010	1231	1	0	0	1	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0011	1231	1	0	0	0	0	1	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0012	1231	1	0	0	1	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF263_chr16_3278491_3296460	0/0	t0013	1231	1	0	1	0	0	0	copy fasta	ZNF263	chr16	3278491	3296460
ZNF264_chr19_57186500_57227846	0/0	t0001	10280	39	0	13	21	0	5	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0002	10267	34	8	8	15	0	3	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0003	10278	31	3	4	18	3	3	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/1	t0004	10267	28	4	4	12	4	3	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0005	10280	11	1	6	0	1	3	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0006	10268	9	8	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0007	10281	8	0	1	7	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0008	10280	8	0	1	2	2	3	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0009	10280	7	7	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0010	10279	5	5	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0011	10280	5	0	1	3	0	1	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0012	10267	4	4	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0013	10279	4	1	1	0	0	2	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0014	10280	4	4	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0015	10280	4	0	0	4	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0016	10279	3	1	2	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0017	10267	3	0	0	3	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0018	10282	3	3	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0019	10275	3	3	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0020	10280	3	0	0	0	0	3	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0021	10280	3	1	2	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0022	10281	3	0	0	1	2	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0023	10280	3	0	0	3	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	1/0	t0024	10280	3	0	1	0	0	1	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0025	10281	3	0	1	2	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0026	10281	3	0	1	1	0	1	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0027	10278	2	0	0	1	0	1	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0028	10279	2	0	0	2	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0029	10281	2	2	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0030	10270	2	2	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0031	10241	2	2	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0032	10269	2	1	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0033	10280	2	0	2	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0034	10278	2	1	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0035	10267	2	2	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846