JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF264_chr19_57186500_57227846	0/0	t0086	10281	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0087	10281	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0088	10279	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0089	10282	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0090	10283	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0091	10282	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0092	10283	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0093	10280	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0094	10270	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0095	10266	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0096	10269	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0097	10267	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0098	10267	1	0	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0099	10266	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0100	10268	1	0	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0101	10267	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0102	10267	1	0	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0103	10267	1	0	0	0	0	1	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0104	10268	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0105	10268	1	0	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0106	10267	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0107	10281	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0108	10280	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0109	10280	1	0	0	0	0	1	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0110	10280	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0111	10279	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0112	10279	1	0	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0113	10267	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0114	10272	1	0	0	0	0	1	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0115	10281	1	0	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0116	10280	1	0	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0117	10361	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0118	10279	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0119	10280	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0120	10273	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0121	10281	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0122	10281	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0123	10281	1	0	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0124	10280	1	0	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0125	10280	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0126	10280	1	0	1	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0127	10284	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0128	10280	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0129	10281	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	t0130	10280	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF266_chr19_9407429_9440573	1/0	t0001	1694	169	28	32	83	9	16	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/1	t0002	1698	166	48	29	65	8	15	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0003	1694	22	0	12	2	0	8	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0004	1696	9	9	0	0	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0005	1698	9	0	0	9	0	0	copy fasta	ZNF266	chr19	9407429	9440573