JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF556_chr19_2862335_2888445	0/0	t0202	5210	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0203	5206	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0204	5208	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0205	5224	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0206	5203	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0207	5203	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0208	5219	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0209	5221	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0210	5201	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0211	5221	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0212	5221	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0213	5217	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0214	5227	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0215	5201	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0216	5211	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0217	5210	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF557_chr19_7064703_7092968	0/0	t0001	4480	31	0	6	19	4	2	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0002	4466	31	0	9	17	2	3	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0003	4481	30	1	8	15	0	6	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0004	4482	22	2	8	6	0	6	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0005	4482	14	1	5	7	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0006	4483	13	0	0	13	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0007	4482	10	0	0	10	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0008	4483	8	0	3	4	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0009	4467	8	8	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0010	4474	8	0	2	6	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0011	4467	7	0	0	6	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0012	4478	7	0	1	5	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0013	4482	6	2	3	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0014	4479	6	0	1	5	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0015	4466	5	5	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0016	4467	5	0	1	4	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0017	4475	5	0	1	3	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0018	4479	5	1	0	3	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0019	4475	5	1	0	3	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0020	4469	4	3	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0021	4478	4	4	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0022	4480	4	3	0	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0023	4483	3	0	1	0	0	2	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0024	4466	3	0	0	3	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	1/0	t0025	4467	3	0	0	0	2	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0026	4483	3	0	1	1	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0027	4470	3	1	1	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0028	4477	3	0	0	3	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0029	4481	3	0	0	0	0	3	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0030	4484	3	0	2	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0031	4479	3	0	0	3	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0032	4479	3	2	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0033	4487	2	2	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0034	4494	2	0	0	0	2	0	copy fasta	ZNF557	chr19	7064703	7092968