Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF697_chr1_119614377_119653266	0/0	t0026	3955	3	3	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0027	3955	3	3	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0028	3959	3	1	0	1	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0029	3958	3	0	1	0	2	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0030	3939	2	2	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0031	3939	2	2	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0032	3941	2	2	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0033	3943	2	2	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0034	3951	2	2	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0035	3947	2	0	0	0	0	2	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0036	3947	2	2	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0037	3951	2	0	1	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0038	3955	2	0	2	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0039	3959	2	0	1	0	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0040	3937	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0041	3943	1	0	1	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0042	3943	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0043	3943	1	0	0	0	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0044	3943	1	0	1	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0045	3942	1	0	0	0	1	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0046	3947	1	0	0	0	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0047	3947	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0048	3947	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0049	3942	1	0	0	0	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0050	3951	1	0	0	0	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0051	3951	1	0	0	0	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0052	3951	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0053	3951	1	0	0	0	1	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0054	3951	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0055	3949	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0056	3951	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0057	3959	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0058	3955	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0059	3959	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0060	3955	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0061	3955	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0062	3955	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0063	3955	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0064	3963	1	0	0	0	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0065	3963	1	0	0	0	0	1	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0066	3947	1	0	0	1	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0067	3946	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0068	3951	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0069	3951	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0070	3879	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF697_chr1_119614377_119653266	0/0	t0071	3951	1	1	0	0	0	0	copy fasta	ZNF697	chr1	119614377	119653266
ZNF699_chr19_9286140_9314838	0/0	t0001	4830	127	22	21	65	8	11	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/1	t0002	4830	112	6	22	66	8	9	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0003	4832	14	12	2	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0004	4831	14	5	2	2	0	5	copy fasta	ZNF699	chr19	9286140	9314838