Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF699_chr19_9286140_9314838	0/0	t0005	4832	12	0	5	1	0	6	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0006	4830	9	6	0	3	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0007	4829	7	7	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0008	4829	7	0	2	5	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0009	4831	6	6	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0010	4831	5	2	0	3	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0011	4833	5	5	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0012	4829	3	1	0	1	0	1	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0013	4831	3	3	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0014	4829	3	1	0	2	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0015	4831	3	0	1	2	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0016	4830	3	3	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0017	4831	3	3	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0018	4828	2	0	1	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0019	4831	2	0	0	2	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0020	4829	2	0	2	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0021	4829	2	1	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0022	4828	2	1	0	0	0	1	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0023	4831	2	2	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0024	4830	2	0	1	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0025	4830	1	0	0	0	1	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	1/0	t0026	4830	1	0	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0027	4830	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0028	4828	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0029	4829	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0030	4831	1	0	0	0	0	1	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0031	4831	1	0	0	0	0	1	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0032	4833	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0033	4830	1	0	0	0	1	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0034	4830	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0035	4829	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0036	4830	1	0	0	0	0	1	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0037	4831	1	0	0	0	0	1	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0038	4831	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0039	4829	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0040	4830	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0041	4830	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0042	4830	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0043	4830	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0044	4828	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0045	4831	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0046	4832	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0047	4830	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0048	4829	1	0	1	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0049	4828	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0050	4846	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0051	4830	1	0	1	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0052	4830	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0053	4830	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0054	4830	1	0	1	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838