Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF699_chr19_9286140_9314838	0/0	t0055	4828	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0056	4832	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0057	4830	1	0	1	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0058	4828	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0059	4831	1	0	0	0	0	1	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0060	4829	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0061	4833	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0062	4831	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0063	4830	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0064	4830	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0065	4831	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0066	4830	1	1	0	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0067	4830	1	0	1	0	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF699_chr19_9286140_9314838	0/0	t0068	4830	1	0	0	1	0	0	copy fasta	ZNF699	chr19	9286140	9314838
ZNF69_chr19_11882782_11911696	1/1	t0001	741	349	79	56	171	7	34	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	t0002	741	19	1	8	1	5	4	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	t0003	741	14	14	0	0	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	t0004	741	6	0	6	0	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	t0005	741	2	0	0	2	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	t0006	741	1	1	0	0	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	t0007	741	1	0	0	1	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	t0008	741	1	1	0	0	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF69_chr19_11882782_11911696	0/0	t0009	741	1	0	0	1	0	0	copy fasta	ZNF69	chr19	11882782	11911696
ZNF700_chr19_11920107_11955763	1/1	t0001	615	320	82	62	123	14	37	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	t0002	615	11	11	0	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	t0003	611	10	0	6	4	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	t0004	615	4	0	3	0	0	1	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	t0005	615	3	3	0	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	t0006	615	1	0	1	0	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF700_chr19_11920107_11955763	0/0	t0007	615	1	0	0	1	0	0	copy fasta	ZNF700	chr19	11920107	11955763
ZNF701_chr19_52565287_52592174	0/0	t0001	3833	55	0	4	46	2	3	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0002	3833	46	5	8	24	2	7	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0003	3833	13	0	8	5	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0004	3844	11	2	4	3	1	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0005	3835	11	0	3	6	0	2	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0006	3835	9	0	0	9	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0007	3848	8	0	2	4	0	2	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0008	3848	7	0	2	1	1	3	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0009	3844	6	6	0	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0010	3847	6	5	1	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0011	3841	6	1	4	1	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0012	3844	5	4	1	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0013	3848	4	4	0	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0014	3844	4	4	0	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0015	3835	4	0	0	4	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0016	3835	4	0	0	4	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0017	3833	4	0	0	0	3	1	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0018	3833	4	0	2	2	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0019	3833	4	0	0	4	0	0	copy fasta	ZNF701	chr19	52565287	52592174
ZNF701_chr19_52565287_52592174	0/0	t0020	3847	4	3	1	0	0	0	copy fasta	ZNF701	chr19	52565287	52592174