Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF792_chr19_34951354_34969229	0/0	t0011	2170	5	5	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0012	2170	5	5	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0013	2170	3	3	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0014	2170	2	0	1	0	1	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0015	2170	2	0	1	0	0	1	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0016	2170	2	2	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0017	2170	2	0	1	0	0	1	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0018	2170	1	0	0	1	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0019	2170	1	0	1	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0020	2170	1	0	0	0	0	1	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0021	2170	1	1	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0022	2170	1	1	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0023	2170	1	0	0	0	1	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0024	2170	1	1	0	0	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF792_chr19_34951354_34969229	0/0	t0025	2170	1	0	0	1	0	0	copy fasta	ZNF792	chr19	34951354	34969229
ZNF793_chr19_37501939_37548333	0/0	t0001	5900	44	0	3	40	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0002	5900	32	3	1	21	1	6	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0003	5899	22	9	5	8	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0004	5900	19	14	1	4	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0005	6212	16	2	5	4	0	5	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0006	5899	14	2	2	8	1	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0007	5899	10	0	0	8	0	2	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0008	5900	10	0	0	10	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0009	5897	9	0	5	3	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0010	5898	8	2	2	3	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0011	5899	8	8	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0012	5900	8	0	0	8	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0013	5900	6	6	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/1	t0014	6213	6	0	4	0	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0015	5900	5	0	0	5	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0016	5899	5	0	0	2	0	3	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0017	5896	4	4	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0018	5899	4	0	2	0	1	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0019	5900	4	0	2	2	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0020	5896	3	1	2	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0021	5899	3	0	0	3	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0022	5898	3	0	0	3	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0023	5899	3	0	2	0	1	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0024	5899	3	3	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0025	5900	3	1	0	2	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0026	5901	3	0	0	2	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0027	5899	3	0	0	0	0	3	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0028	5900	3	3	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0029	6213	3	0	3	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0030	5899	2	0	0	0	2	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0031	5900	2	0	0	2	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0032	5898	2	0	1	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0033	5899	2	0	2	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0034	5900	2	2	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0035	5898	2	0	2	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333