Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF793_chr19_37501939_37548333	0/0	t0036	6212	2	1	0	0	1	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0037	5899	2	1	0	0	1	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0038	5900	2	0	0	2	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0039	6212	2	0	2	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0040	5898	2	0	2	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0041	5900	2	0	2	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0042	5900	2	0	0	2	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0043	5899	2	0	0	2	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0044	5899	2	1	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0045	5900	2	0	2	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0046	5899	1	0	0	0	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0047	6211	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0048	5899	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0049	5898	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0050	5899	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0051	5899	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0052	5899	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0053	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0054	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0055	5899	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0056	5899	1	0	0	0	1	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0057	5899	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0058	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0059	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0060	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0061	5899	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0062	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0063	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0064	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0065	6212	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0066	6211	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0067	5899	1	0	0	0	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0068	5899	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0069	5898	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0070	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0071	6212	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0072	5900	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0073	5900	1	0	0	0	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0074	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0075	6211	1	0	0	0	1	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0076	6213	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0077	6241	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0078	6212	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0079	5899	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0080	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0081	6212	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0082	6226	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0083	6211	1	0	0	0	1	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0084	5901	1	0	0	0	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0085	5899	1	0	0	0	0	1	copy fasta	ZNF793	chr19	37501939	37548333