Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF793_chr19_37501939_37548333	0/0	t0086	5898	1	0	0	0	1	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0087	5897	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0088	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0089	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0090	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0091	5900	1	0	0	0	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0092	5899	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0093	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0094	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0095	5899	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0096	5900	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0097	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0098	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0099	5871	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0100	5898	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	1/0	t0101	5897	1	0	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0102	5900	1	0	0	0	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0103	5901	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0104	5899	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0105	6213	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0106	5901	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0107	5888	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0108	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0109	5901	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0110	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0111	5900	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0112	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0113	5900	1	0	0	0	0	1	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0114	5899	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0115	5900	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0116	5901	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0117	6212	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0118	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0119	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0120	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0121	5901	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0122	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0123	5900	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0124	6213	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0125	5898	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0126	5897	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0127	6234	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0128	5900	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0129	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0130	6226	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0131	5901	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0132	5901	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0133	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0134	5901	1	1	0	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0135	5900	1	0	1	0	0	0	copy fasta	ZNF793	chr19	37501939	37548333