Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF793_chr19_37501939_37548333	0/0	t0136	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0137	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0138	5901	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF793_chr19_37501939_37548333	0/0	t0139	5900	1	0	0	1	0	0	copy fasta	ZNF793	chr19	37501939	37548333
ZNF799_chr19_12385016_12406271	1/1	t0001	652	428	86	74	203	13	50	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	t0002	652	9	8	1	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	t0003	652	1	1	0	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	t0004	652	1	0	0	0	1	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	t0005	652	1	0	1	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	t0006	652	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	t0007	652	1	1	0	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	t0008	652	1	1	0	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	t0009	652	1	0	1	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	t0010	652	1	0	1	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	t0011	652	1	1	0	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF79_chr9_127419382_127450372	1/1	t0001	582	287	70	41	127	13	34	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	t0002	582	64	1	17	37	3	6	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	t0003	582	12	10	2	0	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	t0004	582	4	0	0	4	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	t0005	582	1	0	0	1	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	t0006	582	1	0	0	1	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	t0007	582	1	1	0	0	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF7_chr8_144822560_144848772	0/0	t0001	698	39	0	7	21	3	8	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0002	699	36	0	0	36	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0003	698	35	3	10	17	2	3	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0004	698	31	11	9	8	2	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0005	699	30	0	8	21	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0006	699	16	0	5	6	2	3	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0007	699	12	2	4	3	2	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0008	698	11	3	1	4	1	2	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0009	698	11	0	1	9	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0010	699	9	7	2	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0011	698	9	1	5	0	3	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0012	700	8	0	0	8	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0013	698	7	5	0	0	0	2	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0014	698	6	1	0	4	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0015	700	6	0	1	4	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0016	698	6	3	1	2	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0017	698	6	4	1	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0018	699	5	0	0	5	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0019	699	5	0	0	5	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0020	698	5	5	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0021	699	5	4	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0022	698	5	5	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0023	697	4	0	4	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0024	699	4	1	2	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0025	698	4	1	2	0	1	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0026	699	3	0	0	2	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0027	700	3	3	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	t0028	697	3	0	1	2	0	0	copy fasta	ZNF7	chr8	144822560	144848772