Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF800_chr7_127365043_127397708	0/0	t0017	2479	1	0	0	0	0	1	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0018	2479	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0019	2479	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0020	2546	1	0	1	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0021	2479	1	0	1	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0022	2479	1	0	1	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0023	2479	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	t0024	2479	1	0	0	1	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF804A_chr2_184593529_184944492	0/0	t0001	898	154	63	46	22	7	16	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	t0002	898	44	18	11	5	2	8	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	t0003	898	2	0	0	2	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	t0004	898	1	0	0	0	1	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	t0005	898	1	0	1	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	t0006	898	1	0	0	1	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	t0007	898	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804B_chr7_88754700_89343528	0/0	t0001	1774	47	31	4	12	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0002	1774	44	13	13	10	2	6	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0003	1774	22	1	2	18	0	1	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0004	1774	9	9	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0005	1774	7	0	1	6	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0006	1774	6	5	1	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0007	1774	4	2	2	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0008	1774	4	4	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0009	1774	4	0	0	2	0	2	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0010	1774	3	0	1	1	0	1	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0011	1774	2	2	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0012	1774	2	2	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0013	1774	2	2	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0014	1774	2	0	2	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0015	1774	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0016	1774	1	0	0	0	0	1	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0017	1774	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0018	1774	1	0	1	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0019	1774	1	1	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0020	1774	1	0	1	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0021	1774	1	0	0	1	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	t0022	1774	1	0	0	0	0	1	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF805_chr19_57235632_57267728	0/0	t0001	8286	83	2	16	58	0	7	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0002	8290	40	1	10	17	2	10	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0003	8291	37	11	9	10	1	6	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0004	8285	28	6	2	17	0	3	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0005	8287	16	1	8	4	2	1	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0006	8284	11	0	4	1	3	3	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0007	8286	8	0	2	2	1	3	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/1	t0008	8292	8	1	2	4	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0009	8287	7	7	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0010	8288	6	0	0	5	0	1	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0011	8285	6	0	2	4	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0012	8284	5	5	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0013	8275	5	5	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728