Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF805_chr19_57235632_57267728	0/0	t0064	8281	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0065	8280	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0066	8285	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0067	8291	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0068	8285	1	0	0	0	0	1	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0069	8286	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0070	8288	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0071	8286	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0072	8287	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0073	8288	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0074	8286	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0075	8287	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0076	8290	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0077	8291	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0078	8290	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0079	8291	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0080	8291	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0081	8290	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0082	8290	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0083	8290	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0084	8296	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0085	8292	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0086	8297	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0087	8292	1	0	0	0	1	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0088	8283	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0089	8286	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0090	8284	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0091	8274	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0092	8275	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0093	8285	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0094	8286	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0095	8288	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0096	8290	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0097	8290	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0098	8294	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0099	8291	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0100	8287	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0101	8289	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0102	8290	1	0	0	0	1	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0103	8288	1	0	0	0	1	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0104	8290	1	0	0	0	1	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0105	8290	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0106	8293	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0107	8284	1	0	0	0	0	1	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0108	8273	1	1	0	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0109	8291	1	0	1	0	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0110	8283	1	0	0	0	1	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF805_chr19_57235632_57267728	0/0	t0111	8288	1	0	0	1	0	0	copy fasta	ZNF805	chr19	57235632	57267728
ZNF808_chr19_52522668_52561336	1/1	t0001	874	217	50	45	80	12	28	copy fasta	ZNF808	chr19	52522668	52561336
ZNF808_chr19_52522668_52561336	0/0	t0002	874	159	21	22	97	2	17	copy fasta	ZNF808	chr19	52522668	52561336