Search by Gene
| geneid | 442868 |
|---|---|
| ensemblid | ENSG00000185894.8 |
| hgncid | 18225 |
| symbol | BPY2C |
| name | basic charge Y-linked 2C |
| refseq_nuc | NM_001002761.1 |
| refseq_prot | NP_001002761.1 |
| ensembl_nuc | ENST00000382287.5 |
| ensembl_prot | ENSP00000371724.1 |
| mane_status | MANE Select |
| chr | chrY |
| start | 25030901 |
| end | 25052104 |
| strand | - |
| ver | v1.2 |
| region | chrY:25030901-25052104 |
| region5000 | chrY:25025901-25057104 |
| regionname0 | BPY2C_chrY_25030901_25052104 |
| regionname5000 | BPY2C_chrY_25025901_25057104 |
Multiple Alignments (by translate haplotype frequency)
Multiple Alignments (by aa haplotype similarity)
Multiple Alignments (by aa haplotype frequency)
| ahapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
alen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | aa |
|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001 | 0/0 | 106 | 1 | 0 | 0 | 1 | 0 | 0 | BPY2C_chrY_25025901_25057104 | BPY2C | copy fasta |
| chapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | cseq |
|---|---|---|---|---|---|---|---|---|---|---|---|
| c0001 | 0/0 | 321 | 1 | 0 | 0 | 1 | 0 | 0 | BPY2C_chrY_25025901_25057104 | BPY2C | copy fasta |
| thapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq |
|---|---|---|---|---|---|---|---|---|---|---|---|
| t0001 | 0/0 | 886 | 1 | 0 | 0 | 1 | 0 | 0 | BPY2C_chrY_25025901_25057104 | BPY2C | copy fasta |
| ghapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2
|
total | AFR | AMR | EAS | EUR | SAS | regionname | genename |
|---|---|---|---|---|---|---|---|---|---|
| g0001 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | BPY2C_chrY_25025901_25057104 | BPY2C |
| achapid | ahapid | chapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
total | AFR | AMR | EAS | EUR | SAS | regionname | genename | acseq |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001 | a0001 | c0001 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | BPY2C_chrY_25025901_25057104 | BPY2C | copy fasta |
| acthapid | ahapid | chapid | thapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
total | AFR | AMR | EAS | EUR | SAS | regionname | genename | actseq |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001 | a0001 | c0001 | t0001 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | BPY2C_chrY_25025901_25057104 | BPY2C | copy fasta |
| actghapid | ahapid | chapid | thapid | ghapid | grch38/chm13v2 1/0: The haplotype type is the same as GRCh380/1: The haplotype type is the same as CHM13v20/0: The haplotype type matches neither GRCh38 nor CHM13v21/1: The haplotype type is the same on both GRCh38 and CHM13v2 |
total | AFR | AMR | EAS | EUR | SAS | regionname | genename |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001g0001 | a0001 | c0001 | t0001 | g0001 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | BPY2C_chrY_25025901_25057104 | BPY2C |
| chr:pos | ref | alt | # # of ahapid:amio-acid(protein) level
|
ahapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|
| chr:pos | ref | alt | # # of chapid
|
chapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|
| chr:pos | ref | alt | # # of thapid:transcript level
|
thapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|
| chr:pos | ref | alt | # # of ghapid:genebody level
|
ghapids | # # of haplotypeids
|
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | genebody_biotype | rank | cdna_pos_length | cds_pos_length | aa_pos_length | distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chrY:25037675
|
G | A | 1 | a0001c0001t0001g0001 | 1 | NA18985.hp1 | intron_variant | MODIFIER | c.*106+317C>T | BPY2C | ENSG00000185894.8 | transcript | ENST00000382287.5 | protein_coding | 7/8 | chrY | 25037675 | ||||||
| chrY:25045760
|
T | C | 1 | a0001c0001t0001g0001 | 1 | NA18985.hp1 | intron_variant | MODIFIER | c.-41-1696A>G | BPY2C | ENSG00000185894.8 | transcript | ENST00000382287.5 | protein_coding | 3/8 | chrY | 25045760 |