Joint Open Genome and Omics Platform (JoGo)

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geneid	442868
ensemblid	ENSG00000185894.8
hgncid	18225
symbol	BPY2C
name	basic charge Y-linked 2C
refseq_nuc	NM_001002761.1
refseq_prot	NP_001002761.1
ensembl_nuc	ENST00000382287.5
ensembl_prot	ENSP00000371724.1
mane_status	MANE Select
chr	chrY
start	25030901
end	25052104
strand	-
ver	v1.2
region	chrY:25030901-25052104
region5000	chrY:25025901-25057104
regionname0	BPY2C_chrY_25030901_25052104
regionname5000	BPY2C_chrY_25025901_25057104

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	106	1	0	0	1	0	0	1	BPY2C_chrY_25025901_25057104	BPY2C	copy fasta	chrY	25025901	25057104

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	321	1	0	0	1	0	0	BPY2C_chrY_25025901_25057104	BPY2C	copy fasta	chrY	25025901	25057104

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	886	1	0	0	1	0	0	BPY2C_chrY_25025901_25057104	BPY2C	copy fasta	chrY	25025901	25057104

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	1	0	0	1	0	0	BPY2C_chrY_25025901_25057104	BPY2C	chrY	25025901	25057104

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	321	1	0	0	1	0	0	BPY2C_chrY_25025901_25057104	BPY2C	copy fasta	chrY	25025901	25057104

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1206	1	0	0	1	0	0	BPY2C_chrY_25025901_25057104	BPY2C	copy fasta	chrY	25025901	25057104

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	1	0	0	1	0	0	BPY2C_chrY_25025901_25057104	BPY2C	chrY	25025901	25057104

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	BPY2C_chrY_25025901_25057104	BPY2C	chrY	25025901	25057104

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:25037675	G G	A A	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.106+317C>T c.106+317C>T		BPY2C	ENSG00000185894.8	transcript	ENST00000382287.5	protein_coding	7/8						chrY	25037675
chrY:25045760	T T	C C	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-41-1696A>G c.-41-1696A>G		BPY2C	ENSG00000185894.8	transcript	ENST00000382287.5	protein_coding	3/8						chrY	25045760