Joint Open Genome and Omics Platform (JoGo)

Search by Gene

geneid	649330
ensemblid	ENSG00000277058.3
hgncid	51235
symbol	HNRNPCL3
name	heterogeneous nuclear ribonucleoprotein C like 3
refseq_nuc	NM_001382358.1
refseq_prot	NP_001369287.1
ensembl_nuc	ENST00000617807.3
ensembl_prot	ENSP00000478017.1
mane_status	MANE Select
chr	chr1
start	13060769
end	13062878
strand	+
ver	v1.2
region	chr1:13060769-13062878
region5000	chr1:13055769-13067878
regionname0	HNRNPCL3_chr1_13060769_13062878
regionname5000	HNRNPCL3_chr1_13055769_13067878

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aa
a0001	0/0	293	113	2	31	68	8	4	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
a0002	0/0	293	3	0	1	0	2	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq
c0001	0/0	882	111	2	31	67	7	4	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
c0002	0/0	882	3	0	1	0	2	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
c0003	0/0	882	2	0	0	1	1	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta

thapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq
t0001	0/0	1016	108	2	29	65	8	4	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
t0002	0/0	1016	5	0	1	2	2	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
t0003	0/0	1016	1	0	1	0	0	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
t0004	0/0	1016	1	0	1	0	0	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
t0005	0/0	1016	1	0	0	1	0	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
g0001	0/0	116	2	32	68	10	4	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3

achapid	ahapid	chapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	acseq
a0001c0001	a0001	c0001	0/0	111	2	31	67	7	4	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
a0001c0003	a0001	c0003	0/0	2	0	0	1	1	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
a0002c0002	a0002	c0002	0/0	3	0	1	0	2	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta

acthapid	ahapid	chapid	thapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	actseq
a0001c0001t0001	a0001	c0001	t0001	0/0	106	2	29	64	7	4	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
a0001c0001t0002	a0001	c0001	t0002	0/0	2	0	0	2	0	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
a0001c0001t0003	a0001	c0001	t0003	0/0	1	0	1	0	0	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
a0001c0001t0004	a0001	c0001	t0004	0/0	1	0	1	0	0	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
a0001c0001t0005	a0001	c0001	t0005	0/0	1	0	0	1	0	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
a0001c0003t0001	a0001	c0003	t0001	0/0	2	0	0	1	1	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta
a0002c0002t0002	a0002	c0002	t0002	0/0	3	0	1	0	2	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3	copy fasta

actghapid	ahapid	chapid	thapid	ghapid	grch38/chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename
a0001c0001t0001g0001	a0001	c0001	t0001	g0001	0/0	106	2	29	64	7	4	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
a0001c0001t0002g0001	a0001	c0001	t0002	g0001	0/0	2	0	0	2	0	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
a0001c0001t0003g0001	a0001	c0001	t0003	g0001	0/0	1	0	1	0	0	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
a0001c0001t0004g0001	a0001	c0001	t0004	g0001	0/0	1	0	1	0	0	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
a0001c0001t0005g0001	a0001	c0001	t0005	g0001	0/0	1	0	0	1	0	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
a0001c0003t0001g0001	a0001	c0003	t0001	g0001	0/0	2	0	0	1	1	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
a0002c0002t0002g0001	a0002	c0002	t0002	g0001	0/0	3	0	1	0	2	0	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3

sampleid	haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00280	hp1	a0002	c0002	t0002	g0001	EUR	FIN	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00280	hp2	a0001	c0001	t0001	g0001	EUR	FIN	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00423	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00423	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00544	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00609	hp2	a0001	c0001	t0001	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00639	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00639	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00673	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00673	hp2	a0001	c0001	t0002	g0001	EAS	CHS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00733	hp1	a0001	c0001	t0003	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00733	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00735	hp2	a0002	c0002	t0002	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG00738	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01069	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01081	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01257	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01257	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01358	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01433	hp2	a0001	c0001	t0001	g0001	AMR	CLM	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01943	hp1	a0001	c0001	t0004	g0001	AMR	PEL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01943	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG01993	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02004	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02004	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02132	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02135	hp2	a0001	c0001	t0001	g0001	EAS	KHV	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02165	hp2	a0001	c0001	t0005	g0001	EAS	CDX	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02258	hp2	a0001	c0001	t0001	g0001	AFR	ACB	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG02738	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
HG03710	hp2	a0001	c0001	t0001	g0001	SAS	PJL	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18612	hp2	a0001	c0001	t0001	g0001	EAS	CHB	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18747	hp2	a0001	c0001	t0001	g0001	EAS	CHB	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18941	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18951	hp1	a0001	c0003	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18952	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18954	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18954	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18964	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18964	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18970	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18972	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18972	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18974	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18974	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18976	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18976	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18979	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18983	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18984	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA18989	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19006	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19011	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19011	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19054	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19054	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19058	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19068	hp2	a0001	c0001	t0002	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19074	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19074	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19079	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19085	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19088	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19090	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA19090	hp2	a0001	c0001	t0001	g0001	EAS	JPT	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA20752	hp2	a0001	c0003	t0001	g0001	EUR	TSI	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3
NA20805	hp2	a0002	c0002	t0002	g0001	EUR	TSI	HNRNPCL3_chr1_13055769_13067878	HNRNPCL3

chr:pos	ref	alt	# # of ahapid:amio-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	distance	status	chr	pos
chr1:13062154	C C	T T	1	a0002 a0002	3	HG00280.hp1 HG00735.hp2 NA20805.hp2 HG00280.hp1 HG00735.hp2 NA20805.hp2	missense_variant	MODERATE	c.830C>T c.830C>T	p.Ala277Val p.Ala277Val	HNRNPCL3	ENSG00000277058.3	transcript	ENST00000617807.3	protein_coding	2/2	1173/1897	830/882	277/293			chr1	13062154

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	distance	status	chr	pos
chr1:13061667	T T	C C	1	a0001c0003 a0001c0003	2	NA18951.hp1 NA20752.hp2 NA18951.hp1 NA20752.hp2	synonymous_variant	LOW	c.343T>C c.343T>C	p.Leu115Leu p.Leu115Leu	HNRNPCL3	ENSG00000277058.3	transcript	ENST00000617807.3	protein_coding	2/2	686/1897	343/882	115/293			chr1	13061667

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr1:13060785	A A	G G	2	a0001c0001t0002 a0002c0002t0002 a0001c0001t0002 a0002c0002t0002	5	HG00280.hp1 HG00673.hp2 HG00735.hp2 others(2): Show HG00280.hp1 HG00673.hp2 HG00735.hp2 NA19068.hp2 NA20805.hp2	5_prime_UTR_variant	MODIFIER	c.-327A>G c.-327A>G	HNRNPCL3	ENSG00000277058.3	transcript	ENST00000617807.3	protein_coding	1/2	540	chr1	13060785
chr1:13061182	T T	C C	1	a0001c0001t0003 a0001c0001t0003	1	HG00733.hp1 HG00733.hp1	5_prime_UTR_variant	MODIFIER	c.-143T>C c.-143T>C	HNRNPCL3	ENSG00000277058.3	transcript	ENST00000617807.3	protein_coding	2/2	143	chr1	13061182
chr1:13061284	T T	C C	1	a0001c0001t0004 a0001c0001t0004	1	HG01943.hp1 HG01943.hp1	5_prime_UTR_variant	MODIFIER	c.-41T>C c.-41T>C	HNRNPCL3	ENSG00000277058.3	transcript	ENST00000617807.3	protein_coding	2/2	41	chr1	13061284
chr1:13062649	C C	A A	1	a0001c0001t0005 a0001c0001t0005	1	HG02165.hp2 HG02165.hp2	3_prime_UTR_variant	MODIFIER	c.443C>A c.443C>A	HNRNPCL3	ENSG00000277058.3	transcript	ENST00000617807.3	protein_coding	2/2	443	chr1	13062649

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna_pos_length	cds_pos_length	aa_pos_length	distance	status	chr	pos

Search by Gene

Search

🧬 JoGo Online Haplotype Explorer HNRNPCL3_chr1_13055769_13067878

JoGo Local Haplotype Explorer (on iGV) HNRNPCL3_chr1_13055769_13067878

🧬 Gene Summary

Translation Multiple Alignment View

LD View

AAmino acid (protein) Level Haplotype Info (Total: 2)

CCoding Level Haplotype Info (Total: 3)

TTranscript Level Haplotype Info (Total: 5)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 3)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 7)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 7)

Haplotype Details by Sample (Haploid Level) (Total: 116)

AAmino acid (protein) Level Variants (Effect to Protein Coding Variants) (Total: 1)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Variants (5'UTR+3'UTR) (Total: 4)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

Genealogies

External Link

Annotation (Repeats)

Annotation (SNP Array)