Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	728049
ensemblid	ENSG00000230347.5
hgncid	33289
symbol	CT47A8
name	cancer/testis antigen family 47 member A8
refseq_nuc	NM_001080139.2
refseq_prot	NP_001073608.1
ensembl_nuc	ENST00000457977.3
ensembl_prot	ENSP00000400046.2
mane_status	MANE Select
chr	chrX
start	120948422
end	120951744
strand	-
ver	v1.2
region	chrX:120948422-120951744
region5000	chrX:120943422-120956744
regionname0	CT47A8_chrX_120948422_120951744
regionname5000	CT47A8_chrX_120943422_120956744

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	288	5	0	0	3	1	1	2	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744
a0002	0/0	288	1	0	0	1	0	0	0	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744
a0003	0/0	202	1	0	0	0	0	1	0	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	867	5	0	0	3	1	1	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744
c0002	0/0	868	1	0	0	0	0	1	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744
c0003	0/0	867	1	0	0	1	0	0	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	432	7	0	0	4	1	2	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	4	0	0	2	1	1	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
g0002	0/0	1	0	0	0	0	1	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
g0003	0/0	1	0	0	1	0	0	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
g0004	0/0	1	0	0	1	0	0	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	867	5	0	0	3	1	1	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744
a0002c0003	0/0	867	1	0	0	1	0	0	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744
a0003c0002	0/0	868	1	0	0	0	0	1	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1298	5	0	0	3	1	1	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744
a0002c0003t0001	0/0	1298	1	0	0	1	0	0	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744
a0003c0002t0001	0/0	1299	1	0	0	0	0	1	CT47A8_chrX_120943422_120956744	CT47A8	copy fasta	chrX	120943422	120956744

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	4	0	0	2	1	1	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
a0001c0001t0001g0003	0/0	1	0	0	1	0	0	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
a0002c0003t0001g0004	0/0	1	0	0	1	0	0	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
a0003c0002t0001g0002	0/0	1	0	0	0	0	1	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
HG00621	hp1	a0002	c0003	t0001	g0004	EAS	CHS	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
HG03927	hp1	a0003	c0002	t0001	g0002	SAS	BEB	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
NA19004	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:120950986	G G	A A	1	a0002 a0002	1	HG00621.hp1 HG00621.hp1	missense_variant	MODERATE	c.500C>T c.500C>T	p.Pro167Leu p.Pro167Leu	CT47A8	ENSG00000230347.5	transcript	ENST00000457977.3	protein_coding	1/3	759/1298	500/867	167/288			chrX	120950986
chrX:120951141	C C	CG CG	1	a0003 a0003	1	HG03927.hp1 HG03927.hp1	frameshift_variant	HIGH	c.344dupC c.344dupC	p.Ala116fs p.Ala116fs	CT47A8	ENSG00000230347.5	transcript	ENST00000457977.3	protein_coding	1/3	603/1298	344/867	115/288			chrX	120951141

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:120949489	G G	A A	3	a0001c0001t0001g0001 a0002c0003t0001g0004 a0003c0002t0001g0002 a0001c0001t0001g0001 a0002c0003t0001g0004 a0003c0002t0001g0002	6	HG00140.hp1 HG00621.hp1 HG02056.hp1 others(3): Show HG00140.hp1 HG00621.hp1 HG02056.hp1 HG03927.hp1 HG03927.hp2 NA19088.hp1	intron_variant	MODIFIER	c.31+212C>T c.31+212C>T		CT47A8	ENSG00000230347.5	transcript	ENST00000457977.3	protein_coding	2/2						chrX	120949489