Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	728049
ensemblid	ENSG00000230347.5
hgncid	33289
symbol	CT47A8
name	cancer/testis antigen family 47 member A8
refseq_nuc	NM_001080139.2
refseq_prot	NP_001073608.1
ensembl_nuc	ENST00000457977.3
ensembl_prot	ENSP00000400046.2
mane_status	MANE Select
chr	chrX
start	120948422
end	120951744
strand	-
ver	v1.2
region	chrX:120948422-120951744
region5000	chrX:120943422-120956744
regionname0	CT47A8_chrX_120948422_120951744
regionname5000	CT47A8_chrX_120943422_120956744

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	288	5	0	0	3	1	1	2	CT47A8_chrX_120943422_120956744	CT47A8	MSATG others(283): Show MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAE VVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGN EAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRL MVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAV PADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVT KSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT	chrX	120943422	120956744
a0002	0/0	288	1	0	0	1	0	0	0	CT47A8_chrX_120943422_120956744	CT47A8	MSATG others(283): Show MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAE VVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGN EAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRL MVGPHAAARNLWGNLPLLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAV PADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVT KSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT	chrX	120943422	120956744
a0003	0/0	202	1	0	0	0	0	1	0	CT47A8_chrX_120943422_120956744	CT47A8	MSATG others(197): Show MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAE VVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGN EAANFDLAVVARRYPGVGHSLRAPGHGPLPSPPPLSQRPHPHREPSTQPP DGGATRCCAQPLGQPPPAAAAPEAGCRGRSPGGRGPGPDPGGRIGPRACS AS	chrX	120943422	120956744

achapid	grch38/ chm13v2	alen	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aseq	cseq	chr	start	end
a0001c0001	0/0		864	5	0	0	3	1	1	CT47A8_chrX_120943422_120956744	CT47A8		ATGTC others(859): Show ATGTCTGCCACAGGGGACCGACACCCGACCCAAGGGGACCAGGAGGCCCC GGTAAGCCAGGAGGGAGCACAGGCCGAGGCGGCCGGAGCTGGTAACCAGG AGGGCGGCGACTCCGGCCCCGACAGCAGCGACGTGGTGCCTGCGGCCGAG GTGGTCGGAGTCGCAGGGCCCGTGGAAGGCCTCGGGGAGGAGGAGGGTGA GCAGGCGGCAGGCCTGGCCGCAGTCCCCCGGGGCGGGAGCGCCGAGGAGG ACTCAGATATCGGGCCCGCGACGGAGGAAGAGGAGGAGGAAGAGGGGAAC GAGGCGGCCAACTTCGACTTGGCGGTGGTCGCCCGTCGCTACCCGGCGTC GGGCATTCACTTCGTGCTCCTGGACATGGTCCACTCCCTTCTCCACCGCC TCTCTCACAACGACCACATCCTCATAGAGAACCGTCAACTCAGCCGCCTG ATGGTGGGGCCACACGCTGCTGCGCGCAACCTCTGGGGCAACCTCCCCCC GCTGCTGCTGCCCCAGAGGCTGGGTGCAGGGGCCGCAGCCCGGGCGGGCG AGGGCCTGGGCCTGATCCAGGAGGCCGCATCGGTCCCAGAGCCTGCAGTG CCAGCTGACCTGGCCGAGATGGCCAGGGAGCCCGCGGAGGAGGCCGCAGA GGAGAAGCTCTCAGAGGAGGCCACAGAGGAACCAGACGCAGAGGAACCGG CCACAGAAGAACCGACCGCACAGGAGGCCACGGCCCCAGAGGAAGTCACT AAATCTCAGCCCGAAAAGTGGGATGAAGAGGCCCAAGATGCTGCAGGCGA GGAAGAGAAAGAACAAGAAAAAGAGAAGGATGCGGAAAACAAGGTGAAGA ACTCCAAAGGGACC	chrX	120943422	120956744
a0002c0003	0/0		864	1	0	0	1	0	0	CT47A8_chrX_120943422_120956744	CT47A8		ATGTC others(859): Show ATGTCTGCCACAGGGGACCGACACCCGACCCAAGGGGACCAGGAGGCCCC GGTAAGCCAGGAGGGAGCACAGGCCGAGGCGGCCGGAGCTGGTAACCAGG AGGGCGGCGACTCCGGCCCCGACAGCAGCGACGTGGTGCCTGCGGCCGAG GTGGTCGGAGTCGCAGGGCCCGTGGAAGGCCTCGGGGAGGAGGAGGGTGA GCAGGCGGCAGGCCTGGCCGCAGTCCCCCGGGGCGGGAGCGCCGAGGAGG ACTCAGATATCGGGCCCGCGACGGAGGAAGAGGAGGAGGAAGAGGGGAAC GAGGCGGCCAACTTCGACTTGGCGGTGGTCGCCCGTCGCTACCCGGCGTC GGGCATTCACTTCGTGCTCCTGGACATGGTCCACTCCCTTCTCCACCGCC TCTCTCACAACGACCACATCCTCATAGAGAACCGTCAACTCAGCCGCCTG ATGGTGGGGCCACACGCTGCTGCGCGCAACCTCTGGGGCAACCTCCCCCT GCTGCTGCTGCCCCAGAGGCTGGGTGCAGGGGCCGCAGCCCGGGCGGGCG AGGGCCTGGGCCTGATCCAGGAGGCCGCATCGGTCCCAGAGCCTGCAGTG CCAGCTGACCTGGCCGAGATGGCCAGGGAGCCCGCGGAGGAGGCCGCAGA GGAGAAGCTCTCAGAGGAGGCCACAGAGGAACCAGACGCAGAGGAACCGG CCACAGAAGAACCGACCGCACAGGAGGCCACGGCCCCAGAGGAAGTCACT AAATCTCAGCCCGAAAAGTGGGATGAAGAGGCCCAAGATGCTGCAGGCGA GGAAGAGAAAGAACAAGAAAAAGAGAAGGATGCGGAAAACAAGGTGAAGA ACTCCAAAGGGACC	chrX	120943422	120956744
a0003c0002	0/0		865	1	0	0	0	0	1	CT47A8_chrX_120943422_120956744	CT47A8		ATGTC others(860): Show ATGTCTGCCACAGGGGACCGACACCCGACCCAAGGGGACCAGGAGGCCCC GGTAAGCCAGGAGGGAGCACAGGCCGAGGCGGCCGGAGCTGGTAACCAGG AGGGCGGCGACTCCGGCCCCGACAGCAGCGACGTGGTGCCTGCGGCCGAG GTGGTCGGAGTCGCAGGGCCCGTGGAAGGCCTCGGGGAGGAGGAGGGTGA GCAGGCGGCAGGCCTGGCCGCAGTCCCCCGGGGCGGGAGCGCCGAGGAGG ACTCAGATATCGGGCCCGCGACGGAGGAAGAGGAGGAGGAAGAGGGGAAC GAGGCGGCCAACTTCGACTTGGCGGTGGTCGCCCGTCGCTACCCCGGCGT CGGGCATTCACTTCGTGCTCCTGGACATGGTCCACTCCCTTCTCCACCGC CTCTCTCACAACGACCACATCCTCATAGAGAACCGTCAACTCAGCCGCCT GATGGTGGGGCCACACGCTGCTGCGCGCAACCTCTGGGGCAACCTCCCCC CGCTGCTGCTGCCCCAGAGGCTGGGTGCAGGGGCCGCAGCCCGGGCGGGC GAGGGCCTGGGCCTGATCCAGGAGGCCGCATCGGTCCCAGAGCCTGCAGT GCCAGCTGACCTGGCCGAGATGGCCAGGGAGCCCGCGGAGGAGGCCGCAG AGGAGAAGCTCTCAGAGGAGGCCACAGAGGAACCAGACGCAGAGGAACCG GCCACAGAAGAACCGACCGCACAGGAGGCCACGGCCCCAGAGGAAGTCAC TAAATCTCAGCCCGAAAAGTGGGATGAAGAGGCCCAAGATGCTGCAGGCG AGGAAGAGAAAGAACAAGAAAAAGAGAAGGATGCGGAAAACAAGGTGAAG AACTCCAAAGGGACC	chrX	120943422	120956744

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1298	5	0	0	3	1	1	CT47A8_chrX_120943422_120956744	CT47A8	GCCAA others(1293): Show GCCAACCAGAATCTTTCCCAACTTGTCTAAGTCCTCTCAGGCCAGCCTTG GTGGGAGGTTTCTAGGATTCGCTCCCTGCCCTTCCCATCTTAGGGTGTCG TCTGAGACAGACTCTTATTCCCTCAATAAAGAGAGAGACTCTTATTCCCT CAGCGGCCAGCTCCTCGCCTCCCCTCGGCCGTAGCCACCTCAGTGGTCAC CGTCTTCACCGTGGTCGCCTCAGCCCGCTCGCCACCCCAGTTGAGGCGCT GCTGGTGTCATGTCTGCCACAGGGGACCGACACCCGACCCAAGGGGACCA GGAGGCCCCGGTAAGCCAGGAGGGAGCACAGGCCGAGGCGGCCGGAGCTG GTAACCAGGAGGGCGGCGACTCCGGCCCCGACAGCAGCGACGTGGTGCCT GCGGCCGAGGTGGTCGGAGTCGCAGGGCCCGTGGAAGGCCTCGGGGAGGA GGAGGGTGAGCAGGCGGCAGGCCTGGCCGCAGTCCCCCGGGGCGGGAGCG CCGAGGAGGACTCAGATATCGGGCCCGCGACGGAGGAAGAGGAGGAGGAA GAGGGGAACGAGGCGGCCAACTTCGACTTGGCGGTGGTCGCCCGTCGCTA CCCGGCGTCGGGCATTCACTTCGTGCTCCTGGACATGGTCCACTCCCTTC TCCACCGCCTCTCTCACAACGACCACATCCTCATAGAGAACCGTCAACTC AGCCGCCTGATGGTGGGGCCACACGCTGCTGCGCGCAACCTCTGGGGCAA CCTCCCCCCGCTGCTGCTGCCCCAGAGGCTGGGTGCAGGGGCCGCAGCCC GGGCGGGCGAGGGCCTGGGCCTGATCCAGGAGGCCGCATCGGTCCCAGAG CCTGCAGTGCCAGCTGACCTGGCCGAGATGGCCAGGGAGCCCGCGGAGGA GGCCGCAGAGGAGAAGCTCTCAGAGGAGGCCACAGAGGAACCAGACGCAG AGGAACCGGCCACAGAAGAACCGACCGCACAGGAGGCCACGGCCCCAGAG GAAGTCACTAAATCTCAGCCCGAAAAGTGGGATGAAGAGGCCCAAGATGC TGCAGGCGAGGAAGAGAAAGAACAAGAAAAAGAGAAGGATGCGGAAAACA AGGTGAAGAACTCCAAAGGGACCTAGACGCAGCAGAGGTGAAGCCAAGAA AATCCAGATGCCTGTGGGAATTGTAACACATATCATTCCAAAGTTCGTTA CATCAAAAGTGATATCCAGTGACATCTAACTTTCATGGATGTATGTGACA GTGTTCAAGTTAAAAAATAAAAGTTTGTTTTAAATGAATAAACTGAAA	chrX	120943422	120956744
a0002c0003t0001	0/0	1298	1	0	0	1	0	0	CT47A8_chrX_120943422_120956744	CT47A8	GCCAA others(1293): Show GCCAACCAGAATCTTTCCCAACTTGTCTAAGTCCTCTCAGGCCAGCCTTG GTGGGAGGTTTCTAGGATTCGCTCCCTGCCCTTCCCATCTTAGGGTGTCG TCTGAGACAGACTCTTATTCCCTCAATAAAGAGAGAGACTCTTATTCCCT CAGCGGCCAGCTCCTCGCCTCCCCTCGGCCGTAGCCACCTCAGTGGTCAC CGTCTTCACCGTGGTCGCCTCAGCCCGCTCGCCACCCCAGTTGAGGCGCT GCTGGTGTCATGTCTGCCACAGGGGACCGACACCCGACCCAAGGGGACCA GGAGGCCCCGGTAAGCCAGGAGGGAGCACAGGCCGAGGCGGCCGGAGCTG GTAACCAGGAGGGCGGCGACTCCGGCCCCGACAGCAGCGACGTGGTGCCT GCGGCCGAGGTGGTCGGAGTCGCAGGGCCCGTGGAAGGCCTCGGGGAGGA GGAGGGTGAGCAGGCGGCAGGCCTGGCCGCAGTCCCCCGGGGCGGGAGCG CCGAGGAGGACTCAGATATCGGGCCCGCGACGGAGGAAGAGGAGGAGGAA GAGGGGAACGAGGCGGCCAACTTCGACTTGGCGGTGGTCGCCCGTCGCTA CCCGGCGTCGGGCATTCACTTCGTGCTCCTGGACATGGTCCACTCCCTTC TCCACCGCCTCTCTCACAACGACCACATCCTCATAGAGAACCGTCAACTC AGCCGCCTGATGGTGGGGCCACACGCTGCTGCGCGCAACCTCTGGGGCAA CCTCCCCCTGCTGCTGCTGCCCCAGAGGCTGGGTGCAGGGGCCGCAGCCC GGGCGGGCGAGGGCCTGGGCCTGATCCAGGAGGCCGCATCGGTCCCAGAG CCTGCAGTGCCAGCTGACCTGGCCGAGATGGCCAGGGAGCCCGCGGAGGA GGCCGCAGAGGAGAAGCTCTCAGAGGAGGCCACAGAGGAACCAGACGCAG AGGAACCGGCCACAGAAGAACCGACCGCACAGGAGGCCACGGCCCCAGAG GAAGTCACTAAATCTCAGCCCGAAAAGTGGGATGAAGAGGCCCAAGATGC TGCAGGCGAGGAAGAGAAAGAACAAGAAAAAGAGAAGGATGCGGAAAACA AGGTGAAGAACTCCAAAGGGACCTAGACGCAGCAGAGGTGAAGCCAAGAA AATCCAGATGCCTGTGGGAATTGTAACACATATCATTCCAAAGTTCGTTA CATCAAAAGTGATATCCAGTGACATCTAACTTTCATGGATGTATGTGACA GTGTTCAAGTTAAAAAATAAAAGTTTGTTTTAAATGAATAAACTGAAA	chrX	120943422	120956744
a0003c0002t0001	0/0	1299	1	0	0	0	0	1	CT47A8_chrX_120943422_120956744	CT47A8	GCCAA others(1294): Show GCCAACCAGAATCTTTCCCAACTTGTCTAAGTCCTCTCAGGCCAGCCTTG GTGGGAGGTTTCTAGGATTCGCTCCCTGCCCTTCCCATCTTAGGGTGTCG TCTGAGACAGACTCTTATTCCCTCAATAAAGAGAGAGACTCTTATTCCCT CAGCGGCCAGCTCCTCGCCTCCCCTCGGCCGTAGCCACCTCAGTGGTCAC CGTCTTCACCGTGGTCGCCTCAGCCCGCTCGCCACCCCAGTTGAGGCGCT GCTGGTGTCATGTCTGCCACAGGGGACCGACACCCGACCCAAGGGGACCA GGAGGCCCCGGTAAGCCAGGAGGGAGCACAGGCCGAGGCGGCCGGAGCTG GTAACCAGGAGGGCGGCGACTCCGGCCCCGACAGCAGCGACGTGGTGCCT GCGGCCGAGGTGGTCGGAGTCGCAGGGCCCGTGGAAGGCCTCGGGGAGGA GGAGGGTGAGCAGGCGGCAGGCCTGGCCGCAGTCCCCCGGGGCGGGAGCG CCGAGGAGGACTCAGATATCGGGCCCGCGACGGAGGAAGAGGAGGAGGAA GAGGGGAACGAGGCGGCCAACTTCGACTTGGCGGTGGTCGCCCGTCGCTA CCCCGGCGTCGGGCATTCACTTCGTGCTCCTGGACATGGTCCACTCCCTT CTCCACCGCCTCTCTCACAACGACCACATCCTCATAGAGAACCGTCAACT CAGCCGCCTGATGGTGGGGCCACACGCTGCTGCGCGCAACCTCTGGGGCA ACCTCCCCCCGCTGCTGCTGCCCCAGAGGCTGGGTGCAGGGGCCGCAGCC CGGGCGGGCGAGGGCCTGGGCCTGATCCAGGAGGCCGCATCGGTCCCAGA GCCTGCAGTGCCAGCTGACCTGGCCGAGATGGCCAGGGAGCCCGCGGAGG AGGCCGCAGAGGAGAAGCTCTCAGAGGAGGCCACAGAGGAACCAGACGCA GAGGAACCGGCCACAGAAGAACCGACCGCACAGGAGGCCACGGCCCCAGA GGAAGTCACTAAATCTCAGCCCGAAAAGTGGGATGAAGAGGCCCAAGATG CTGCAGGCGAGGAAGAGAAAGAACAAGAAAAAGAGAAGGATGCGGAAAAC AAGGTGAAGAACTCCAAAGGGACCTAGACGCAGCAGAGGTGAAGCCAAGA AAATCCAGATGCCTGTGGGAATTGTAACACATATCATTCCAAAGTTCGTT ACATCAAAAGTGATATCCAGTGACATCTAACTTTCATGGATGTATGTGAC AGTGTTCAAGTTAAAAAATAAAAGTTTGTTTTAAATGAATAAACTGAAA	chrX	120943422	120956744

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	4	0	0	2	1	1	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
a0001c0001t0001g0003	0/0	1	0	0	1	0	0	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
a0002c0003t0001g0004	0/0	1	0	0	1	0	0	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
a0003c0002t0001g0002	0/0	1	0	0	0	0	1	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
HG00621	hp1	a0002	c0003	t0001	g0004	EAS	CHS	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
HG03927	hp1	a0003	c0002	t0001	g0002	SAS	BEB	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
HG03927	hp2	a0001	c0001	t0001	g0001	SAS	BEB	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
NA19004	hp1	a0001	c0001	t0001	g0003	EAS	JPT	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744
NA19088	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CT47A8_chrX_120943422_120956744	CT47A8	chrX	120943422	120956744

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:120950986	G G	A A	1	a0002 a0002	1	HG00621.hp1 HG00621.hp1	missense_variant	MODERATE	c.500C>T c.500C>T	p.Pro167Leu p.Pro167Leu	CT47A8	ENSG00000230347.5	transcript	ENST00000457977.3	protein_coding	1/3	759/1298	500/867	167/288			chrX	120950986
	chrX:120951141	C C	CG CG	1	a0003 a0003	1	HG03927.hp1 HG03927.hp1	frameshift_variant	HIGH	c.344dupC c.344dupC	p.Ala116fs p.Ala116fs	CT47A8	ENSG00000230347.5	transcript	ENST00000457977.3	protein_coding	1/3	603/1298	344/867	115/288			chrX	120951141

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:120949489	G G	A A	3	a0001c0001t0001g0001 a0002c0003t0001g0004 a0003c0002t0001g0002 a0001c0001t0001g0001 a0002c0003t0001g0004 a0003c0002t0001g0002	6	HG00140.hp1 HG00621.hp1 HG02056.hp1 others(3): Show HG00140.hp1 HG00621.hp1 HG02056.hp1 HG03927.hp1 HG03927.hp2 NA19088.hp1	intron_variant	MODIFIER	c.31+212C>T c.31+212C>T		CT47A8	ENSG00000230347.5	transcript	ENST00000457977.3	protein_coding	2/2						chrX	120949489