Joint Open Genome and Omics Platform (JoGo)

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geneid	728072
ensemblid	ENSG00000237957.6
hgncid	33286
symbol	CT47A5
name	cancer/testis antigen family 47 member A5
refseq_nuc	NM_001080142.2
refseq_prot	NP_001073611.1
ensembl_nuc	ENST00000439466.3
ensembl_prot	ENSP00000390070.2
mane_status	MANE Select
chr	chrX
start	120963026
end	120966348
strand	-
ver	v1.2
region	chrX:120963026-120966348
region5000	chrX:120958026-120971348
regionname0	CT47A5_chrX_120963026_120966348
regionname5000	CT47A5_chrX_120958026_120971348

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	288	114	28	33	29	8	16	18	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0002	0/0	288	7	6	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0003	0/0	288	3	0	2	1	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0004	0/0	288	1	0	0	0	0	1	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0005	0/0	202	1	0	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0006	0/0	288	1	0	0	1	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0007	0/0	288	1	1	0	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0008	0/0	288	1	1	0	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0009	0/0	288	1	1	0	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348

chapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	867	103	24	29	27	8	15	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0002	0/0	867	8	3	3	2	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0003	0/0	867	7	6	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0004	0/0	867	2	0	1	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0005	0/0	867	2	0	2	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0006	0/0	867	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0007	0/0	867	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0008	0/0	867	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0009	0/0	867	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0010	0/0	867	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0011	0/0	868	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0012	0/0	867	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
c0013	0/0	867	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348

thapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	432	89	26	22	23	5	13	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
t0002	0/0	432	31	10	10	7	1	3	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
t0003	0/0	432	6	0	4	0	2	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
t0004	0/0	422	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
t0005	0/0	430	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
t0006	0/0	432	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
t0007	0/0	432	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348

ghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	31	0	12	9	4	6	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0002	0/0	23	6	8	5	1	3	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0003	0/0	14	11	2	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0004	0/0	11	1	2	5	1	2	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0005	0/0	6	5	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0006	0/0	5	2	1	2	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0007	0/0	4	0	3	0	1	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0008	0/0	2	0	2	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0009	0/0	2	0	0	2	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0010	0/0	2	2	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0011	0/0	2	2	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0012	0/0	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0013	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0014	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0015	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0016	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0017	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0018	0/0	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0019	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0020	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0021	0/0	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0022	0/0	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0023	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0024	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0025	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0026	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0027	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0028	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0029	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0030	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0031	0/0	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0032	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0033	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0034	0/0	1	0	0	0	1	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0035	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0036	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0037	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0038	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
g0039	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	867	103	24	29	27	8	15	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0002	0/0	867	8	3	3	2	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0004	0/0	867	2	0	1	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0008	0/0	867	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0002c0003	0/0	867	7	6	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0003c0005	0/0	867	2	0	2	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0003c0010	0/0	867	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0004c0006	0/0	867	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0005c0011	0/0	868	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0006c0009	0/0	867	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0007c0007	0/0	867	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0008c0012	0/0	867	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0009c0013	0/0	867	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1298	72	17	17	21	5	12	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0001t0002	0/0	1298	24	7	8	5	1	3	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0001t0003	0/0	1298	5	0	3	0	2	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0001t0005	0/0	1296	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0001t0006	0/0	1298	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0002t0002	0/0	1298	6	2	2	2	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0002t0003	0/0	1298	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0002t0007	0/0	1298	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0004t0001	0/0	1298	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0004t0004	0/0	1288	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0001c0008t0001	0/0	1298	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0002c0003t0001	0/0	1298	6	5	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0002c0003t0002	0/0	1298	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0003c0005t0001	0/0	1298	2	0	2	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0003c0010t0001	0/0	1298	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0004c0006t0001	0/0	1298	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0005c0011t0001	0/0	1299	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0006c0009t0001	0/0	1298	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0007c0007t0001	0/0	1298	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0008c0012t0001	0/0	1298	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348
a0009c0013t0001	0/0	1298	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	copy fasta	chrX	120958026	120971348

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	31	0	12	9	4	6	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0003	0/0	14	11	2	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0004	0/0	11	1	2	5	1	2	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0009	0/0	2	0	0	2	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0010	0/0	2	2	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0011	0/0	2	2	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0016	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0017	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0018	0/0	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0019	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0020	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0021	0/0	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0022	0/0	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0023	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0024	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0001g0025	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0002g0002	0/0	23	6	8	5	1	3	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0002g0036	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0003g0007	0/0	4	0	3	0	1	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0003g0034	0/0	1	0	0	0	1	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0005g0032	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0001t0006g0033	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0002t0002g0006	0/0	5	2	1	2	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0002t0002g0038	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0002t0003g0035	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0002t0007g0039	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0004t0001g0015	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0004t0004g0031	0/0	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0001c0008t0001g0014	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0002c0003t0001g0005	0/0	6	5	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0002c0003t0002g0037	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0003c0005t0001g0008	0/0	2	0	2	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0003c0010t0001g0027	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0004c0006t0001g0012	0/0	1	0	0	0	0	1	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0005c0011t0001g0028	0/0	1	0	1	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0006c0009t0001g0026	0/0	1	0	0	1	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0007c0007t0001g0013	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0008c0012t0001g0029	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
a0009c0013t0001g0030	0/0	1	1	0	0	0	0	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0004	EUR	GBR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00558	hp1	a0001	c0001	t0001	g0009	EAS	CHS	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00597	hp1	a0001	c0001	t0001	g0009	EAS	CHS	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00597	hp2	a0001	c0001	t0005	g0032	EAS	CHS	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00621	hp1	a0001	c0001	t0001	g0004	EAS	CHS	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00642	hp1	a0001	c0004	t0001	g0015	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00733	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00733	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00738	hp1	a0003	c0005	t0001	g0008	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG00741	hp2	a0001	c0001	t0002	g0002	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01071	hp2	a0001	c0001	t0003	g0007	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01106	hp1	a0001	c0002	t0002	g0006	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01109	hp1	a0001	c0001	t0002	g0002	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01169	hp1	a0001	c0002	t0002	g0038	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01169	hp2	a0002	c0003	t0001	g0005	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01175	hp1	a0001	c0001	t0002	g0002	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01175	hp2	a0001	c0002	t0003	g0035	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01261	hp1	a0001	c0001	t0002	g0002	AMR	CLM	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01346	hp1	a0001	c0001	t0002	g0002	AMR	CLM	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01346	hp2	a0001	c0001	t0001	g0003	AMR	CLM	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01358	hp1	a0001	c0001	t0002	g0002	AMR	CLM	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01361	hp1	a0001	c0001	t0003	g0007	AMR	CLM	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01361	hp2	a0001	c0001	t0001	g0003	AMR	CLM	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01433	hp1	a0001	c0001	t0003	g0007	AMR	CLM	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01515	hp1	a0001	c0001	t0003	g0034	EUR	IBS	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01517	hp1	a0001	c0001	t0003	g0007	EUR	IBS	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01928	hp1	a0003	c0005	t0001	g0008	AMR	PEL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01934	hp1	a0001	c0001	t0002	g0002	AMR	PEL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01975	hp2	a0001	c0001	t0001	g0004	AMR	PEL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01981	hp1	a0001	c0001	t0002	g0002	AMR	PEL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01981	hp2	a0001	c0001	t0001	g0004	AMR	PEL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02004	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02004	hp2	a0005	c0011	t0001	g0028	AMR	PEL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02132	hp1	a0001	c0001	t0002	g0002	EAS	KHV	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02135	hp1	a0001	c0001	t0001	g0017	EAS	KHV	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02257	hp1	a0001	c0001	t0001	g0010	AFR	ACB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02257	hp2	a0001	c0001	t0002	g0002	AFR	ACB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02258	hp1	a0001	c0001	t0001	g0011	AFR	ACB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02615	hp1	a0001	c0001	t0001	g0003	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02615	hp2	a0001	c0001	t0001	g0003	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02622	hp1	a0001	c0001	t0001	g0004	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02622	hp2	a0001	c0001	t0001	g0003	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02630	hp1	a0001	c0001	t0001	g0003	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02630	hp2	a0001	c0001	t0002	g0036	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02647	hp1	a0001	c0001	t0002	g0002	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02683	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02683	hp2	a0001	c0001	t0001	g0021	SAS	PJL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02717	hp1	a0001	c0001	t0002	g0002	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02723	hp1	a0001	c0008	t0001	g0014	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02723	hp2	a0002	c0003	t0001	g0005	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02735	hp1	a0001	c0001	t0001	g0018	SAS	PJL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02738	hp1	a0001	c0001	t0001	g0004	SAS	PJL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02886	hp1	a0001	c0001	t0001	g0019	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02886	hp2	a0001	c0001	t0002	g0002	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02896	hp1	a0001	c0001	t0001	g0003	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02896	hp2	a0001	c0001	t0001	g0003	AFR	GWD	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02965	hp1	a0001	c0001	t0001	g0003	AFR	ESN	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02970	hp1	a0002	c0003	t0001	g0005	AFR	ESN	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02970	hp2	a0001	c0001	t0002	g0002	AFR	ESN	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03130	hp1	a0001	c0001	t0001	g0011	AFR	ESN	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03195	hp1	a0009	c0013	t0001	g0030	AFR	ESN	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03195	hp2	a0002	c0003	t0001	g0005	AFR	ESN	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03209	hp1	a0002	c0003	t0002	g0037	AFR	MSL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03453	hp1	a0001	c0002	t0002	g0006	AFR	MSL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03453	hp2	a0007	c0007	t0001	g0013	AFR	MSL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03486	hp1	a0002	c0003	t0001	g0005	AFR	MSL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03486	hp2	a0001	c0001	t0001	g0003	AFR	MSL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03490	hp1	a0001	c0001	t0002	g0002	SAS	PJL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03492	hp1	a0001	c0001	t0002	g0002	SAS	PJL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03654	hp1	a0004	c0006	t0001	g0012	SAS	PJL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03688	hp1	a0001	c0001	t0001	g0003	SAS	STU	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03704	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03704	hp2	a0001	c0001	t0001	g0004	SAS	PJL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03831	hp1	a0001	c0001	t0001	g0001	SAS	BEB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03831	hp2	a0001	c0001	t0001	g0001	SAS	BEB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG04115	hp1	a0001	c0001	t0001	g0022	SAS	STU	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG04228	hp1	a0001	c0004	t0004	g0031	SAS	STU	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18747	hp1	a0001	c0001	t0002	g0002	EAS	CHB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18941	hp2	a0001	c0001	t0001	g0004	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18944	hp1	a0001	c0001	t0001	g0020	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18948	hp1	a0006	c0009	t0001	g0026	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18960	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18982	hp1	a0001	c0002	t0002	g0006	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18983	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18988	hp1	a0001	c0001	t0001	g0023	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18992	hp1	a0001	c0001	t0002	g0002	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA18992	hp2	a0001	c0001	t0001	g0024	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA19043	hp1	a0001	c0001	t0001	g0003	AFR	LWK	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA19055	hp1	a0001	c0001	t0001	g0016	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA19070	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA19074	hp1	a0001	c0001	t0001	g0004	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA19074	hp2	a0001	c0001	t0002	g0002	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA19085	hp1	a0001	c0001	t0002	g0002	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA19090	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA19090	hp2	a0001	c0002	t0002	g0006	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA19091	hp1	a0003	c0010	t0001	g0027	EAS	JPT	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA20752	hp1	a0001	c0001	t0002	g0002	EUR	TSI	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
NA20905	hp1	a0001	c0001	t0002	g0002	SAS	GIH	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01123	hp1	a0001	c0001	t0006	g0033	AMR	CLM	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG01123	hp2	a0001	c0001	t0001	g0025	AMR	CLM	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02109	hp1	a0001	c0002	t0007	g0039	AFR	ACB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02109	hp2	a0001	c0002	t0002	g0006	AFR	ACB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02486	hp1	a0001	c0001	t0001	g0003	AFR	ACB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02559	hp1	a0008	c0012	t0001	g0029	AFR	ACB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG02559	hp2	a0001	c0001	t0002	g0002	AFR	ACB	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG03471	hp1	a0001	c0001	t0001	g0003	AFR	MSL	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG06807	hp1	a0001	c0001	t0001	g0010	AFR	USA	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348
HG06807	hp2	a0002	c0003	t0001	g0005	AFR	USA	CT47A5_chrX_120958026_120971348	CT47A5	chrX	120958026	120971348

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:120964422	C C	G G	1	a0003 a0003	3	HG00738.hp1 HG01928.hp1 NA19091.hp1 HG00738.hp1 HG01928.hp1 NA19091.hp1	missense_variant	MODERATE	c.781G>C c.781G>C	p.Ala261Pro p.Ala261Pro	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	2/3	1040/1298	781/867	261/288	chrX	120964422
chrX:120965459	G G	C C	2	a0002 a0007 a0002 a0007	8	HG01169.hp2 HG02723.hp2 HG02970.hp1 others(5): Show HG01169.hp2 HG02723.hp2 HG02970.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp2 HG03486.hp1 HG06807.hp2	missense_variant	MODERATE	c.631C>G c.631C>G	p.Pro211Ala p.Pro211Ala	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	890/1298	631/867	211/288	chrX	120965459
chrX:120965590	G G	A A	1	a0006 a0006	1	NA18948.hp1 NA18948.hp1	missense_variant	MODERATE	c.500C>T c.500C>T	p.Pro167Leu p.Pro167Leu	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	759/1298	500/867	167/288	chrX	120965590
chrX:120965590	G G	T T	1	a0007 a0007	1	HG03453.hp2 HG03453.hp2	missense_variant	MODERATE	c.500C>A c.500C>A	p.Pro167Gln p.Pro167Gln	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	759/1298	500/867	167/288	chrX	120965590
chrX:120965852	T T	TC TC	1	a0005 a0005	1	HG02004.hp2 HG02004.hp2	frameshift_variant	HIGH	c.237dupG c.237dupG	p.Ser80fs p.Ser80fs	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	496/1298	237/867	79/288	chrX	120965852
chrX:120965860	C C	T T	1	a0004 a0004	1	HG03654.hp1 HG03654.hp1	missense_variant	MODERATE	c.230G>A c.230G>A	p.Arg77Gln p.Arg77Gln	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	489/1298	230/867	77/288	chrX	120965860
chrX:120965864	G G	A A	1	a0008 a0008	1	HG02559.hp1 HG02559.hp1	missense_variant	MODERATE	c.226C>T c.226C>T	p.Pro76Ser p.Pro76Ser	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	485/1298	226/867	76/288	chrX	120965864
chrX:120965872	G G	C C	1	a0008 a0008	1	HG02559.hp1 HG02559.hp1	missense_variant	MODERATE	c.218C>G c.218C>G	p.Ala73Gly p.Ala73Gly	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	477/1298	218/867	73/288	chrX	120965872
chrX:120966019	T T	C C	1	a0009 a0009	1	HG03195.hp1 HG03195.hp1	missense_variant	MODERATE	c.71A>G c.71A>G	p.Gln24Arg p.Gln24Arg	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	330/1298	71/867	24/288	chrX	120966019

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:120964369	C C	T T	1	a0001c0004 a0001c0004	2	HG00642.hp1 HG04228.hp1 HG00642.hp1 HG04228.hp1	synonymous_variant	LOW	c.834G>A c.834G>A	p.Ala278Ala p.Ala278Ala	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	2/3	1093/1298	834/867	278/288	chrX	120964369
chrX:120965391	C C	T T	1	a0001c0004 a0001c0004	2	HG00642.hp1 HG04228.hp1 HG00642.hp1 HG04228.hp1	synonymous_variant	LOW	c.699G>A c.699G>A	p.Pro233Pro p.Pro233Pro	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	958/1298	699/867	233/288	chrX	120965391
chrX:120965475	G G	C C	2	a0001c0002 a0004c0006 a0001c0002 a0004c0006	9	HG01106.hp1 HG01169.hp1 HG01175.hp2 others(6): Show HG01106.hp1 HG01169.hp1 HG01175.hp2 HG02109.hp1 HG02109.hp2 HG03453.hp1 HG03654.hp1 NA18982.hp1 NA19090.hp2	synonymous_variant	LOW	c.615C>G c.615C>G	p.Ala205Ala p.Ala205Ala	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	874/1298	615/867	205/288	chrX	120965475
chrX:120965580	C C	T T	1	a0001c0008 a0001c0008	1	HG02723.hp1 HG02723.hp1	synonymous_variant	LOW	c.510G>A c.510G>A	p.Leu170Leu p.Leu170Leu	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	769/1298	510/867	170/288	chrX	120965580
chrX:120965628	T T	G G	1	a0003c0010 a0003c0010	1	NA19091.hp1 NA19091.hp1	synonymous_variant	LOW	c.462A>C c.462A>C	p.Pro154Pro p.Pro154Pro	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	721/1298	462/867	154/288	chrX	120965628

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:120966155	ACTGAGGT ACTGAGGT	A A	1	a0001c0001t0005 a0001c0001t0005	1	HG00597.hp2 HG00597.hp2	5_prime_UTR_variant	MODIFIER	c.-73_-67delACCTCAG c.-73_-67delACCTCAG	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	67	chrX	120966155
chrX:120966166	T T	C C	1	a0001c0002t0007 a0001c0002t0007	1	HG02109.hp1 HG02109.hp1	5_prime_UTR_variant	MODIFIER	c.-77A>G c.-77A>G	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	77	chrX	120966166
chrX:120966179	AGGCGAGG others(3): Show AGGCGAGGAGC	A A	1	a0001c0004t0004 a0001c0004t0004	1	HG04228.hp1 HG04228.hp1	5_prime_UTR_variant	MODIFIER	c.-100_-91delGCTCCTC others(3): Show c.-100_-91delGCTCCTCGCC	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	91	chrX	120966179
chrX:120966204	A A	AT AT	1	a0001c0001t0005 a0001c0001t0005	1	HG00597.hp2 HG00597.hp2	5_prime_UTR_variant	MODIFIER	c.-116dupA c.-116dupA	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	116	chrX	120966204
chrX:120966204	A A	G G	3	a0001c0001t0003 a0001c0001t0006 a0001c0002t0003 a0001c0001t0003 a0001c0001t0006 a0001c0002t0003	7	HG01071.hp2 HG01123.hp1 HG01175.hp2 others(4): Show HG01071.hp2 HG01123.hp1 HG01175.hp2 HG01361.hp1 HG01433.hp1 HG01515.hp1 HG01517.hp1	5_prime_UTR_variant	MODIFIER	c.-115T>C c.-115T>C	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	115	chrX	120966204
chrX:120966226	A A	AG AG	1	a0001c0001t0005 a0001c0001t0005	1	HG00597.hp2 HG00597.hp2	5_prime_UTR_variant	MODIFIER	c.-138dupC c.-138dupC	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	138	chrX	120966226
chrX:120966261	A A	AT AT	1	a0001c0001t0005 a0001c0001t0005	1	HG00597.hp2 HG00597.hp2	5_prime_UTR_variant	MODIFIER	c.-173dupA c.-173dupA	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	173	chrX	120966261
chrX:120966303	G G	T T	1	a0001c0001t0006 a0001c0001t0006	1	HG01123.hp1 HG01123.hp1	5_prime_UTR_variant	MODIFIER	c.-214C>A c.-214C>A	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	214	chrX	120966303
chrX:120966311	G G	GA GA	1	a0001c0001t0005 a0001c0001t0005	1	HG00597.hp2 HG00597.hp2	5_prime_UTR_variant	MODIFIER	c.-223dupT c.-223dupT	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	223	chrX	120966311
chrX:120966345	T T	C C	7	a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 others(4): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0002t0002 a0001c0002t0003 a0001c0002t0007 a0002c0003t0002	39	HG00741.hp2 HG01071.hp2 HG01106.hp1 others(36): Show HG00741.hp2 HG01071.hp2 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01261.hp1 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01433.hp1 HG01515.hp1 HG01517.hp1 HG01934.hp1 HG01981.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02257.hp2 HG02559.hp2 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02886.hp2 HG02970.hp2 HG03209.hp1 HG03453.hp1 HG03490.hp1 HG03492.hp1 NA18747.hp1 NA18982.hp1 NA18992.hp1 NA19074.hp2 NA19085.hp1 NA19090.hp2 NA20752.hp1 NA20905.hp1	5_prime_UTR_variant	MODIFIER	c.-256A>G c.-256A>G	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	256	chrX	120966345
chrX:120966345	T T	TG TG	1	a0001c0001t0005 a0001c0001t0005	1	HG00597.hp2 HG00597.hp2	5_prime_UTR_variant	MODIFIER	c.-257dupC c.-257dupC	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/3	257	chrX	120966345

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:120963172	GA GA	G G	1	a0005c0011t0001g0028 a0005c0011t0001g0028	1	HG02004.hp2 HG02004.hp2	splice_region_variant&intron_variant	LOW	c.32-7delT c.32-7delT	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	2/2	chrX	120963172
chrX:120963220	G G	A A	27	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0010 others(24): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0002g0002 a0001c0001t0003g0007 a0001c0001t0003g0034 a0001c0001t0005g0032 a0001c0001t0006g0033 a0001c0002t0002g0006 a0001c0002t0002g0038 a0001c0002t0003g0035 a0001c0002t0007g0039 a0001c0008t0001g0014 a0002c0003t0001g0005 a0002c0003t0002g0037 a0004c0006t0001g0012 a0005c0011t0001g0028 a0006c0009t0001g0026 a0007c0007t0001g0013 a0009c0013t0001g0030	86	HG00140.hp1 HG00597.hp2 HG00621.hp1 others(83): Show HG00140.hp1 HG00597.hp2 HG00621.hp1 HG00741.hp2 HG01071.hp2 HG01106.hp1 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01261.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp1 HG01517.hp1 HG01934.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02135.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02486.hp1 HG02559.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp2 HG04115.hp1 HG06807.hp1 HG06807.hp2 NA18747.hp1 NA18941.hp2 NA18948.hp1 NA18960.hp1 NA18982.hp1 NA18988.hp1 NA18992.hp1 NA18992.hp2 NA19043.hp1 NA19070.hp1 NA19074.hp1 NA19074.hp2 NA19085.hp1 NA19090.hp2 NA20752.hp1 NA20905.hp1	intron_variant	MODIFIER	c.32-54C>T c.32-54C>T	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	2/2	chrX	120963220
chrX:120963534	T T	G G	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.32-368A>C c.32-368A>C	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	2/2	chrX	120963534
chrX:120963585	CG CG	C C	2	a0001c0001t0001g0010 a0001c0001t0001g0017 a0001c0001t0001g0010 a0001c0001t0001g0017	3	HG02135.hp1 HG02257.hp1 HG06807.hp1 HG02135.hp1 HG02257.hp1 HG06807.hp1	intron_variant	MODIFIER	c.32-420delC c.32-420delC	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	2/2	chrX	120963585
chrX:120963810	T T	C C	12	a0001c0001t0001g0004 a0001c0001t0001g0010 a0001c0001t0001g0017 others(9): Show a0001c0001t0001g0004 a0001c0001t0001g0010 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0005g0032 a0005c0011t0001g0028 a0006c0009t0001g0026 a0009c0013t0001g0030	23	HG00140.hp1 HG00597.hp2 HG00621.hp1 others(20): Show HG00140.hp1 HG00597.hp2 HG00621.hp1 HG01123.hp2 HG01975.hp2 HG01981.hp2 HG02004.hp2 HG02135.hp1 HG02257.hp1 HG02622.hp1 HG02735.hp1 HG02738.hp1 HG03195.hp1 HG03704.hp2 HG04115.hp1 HG06807.hp1 NA18941.hp2 NA18948.hp1 NA18960.hp1 NA18988.hp1 NA18992.hp2 NA19070.hp1 NA19074.hp1	intron_variant	MODIFIER	c.31+495A>G c.31+495A>G	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	2/2	chrX	120963810
chrX:120964093	A A	G G	4	a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 others(1): Show a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025	4	HG01123.hp2 HG04115.hp1 NA18988.hp1 others(1): Show HG01123.hp2 HG04115.hp1 NA18988.hp1 NA18992.hp2	intron_variant	MODIFIER	c.31+212T>C c.31+212T>C	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	2/2	chrX	120964093
chrX:120964170	A A	T T	1	a0001c0001t0001g0009 a0001c0001t0001g0009	2	HG00558.hp1 HG00597.hp1 HG00558.hp1 HG00597.hp1	intron_variant	MODIFIER	c.31+135T>A c.31+135T>A	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	2/2	chrX	120964170
chrX:120964239	T T	TA TA	1	a0001c0001t0001g0024 a0001c0001t0001g0024	1	NA18992.hp2 NA18992.hp2	intron_variant	MODIFIER	c.31+65dupT c.31+65dupT	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	2/2	chrX	120964239
chrX:120964278	G G	C C	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	NA18944.hp1 NA18944.hp1	intron_variant	MODIFIER	c.31+27C>G c.31+27C>G	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	2/2	chrX	120964278
chrX:120964698	TC TC	T T	1	a0005c0011t0001g0028 a0005c0011t0001g0028	1	HG02004.hp2 HG02004.hp2	intron_variant	MODIFIER	c.743-239delG c.743-239delG	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120964698
chrX:120964756	C C	T T	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.743-296G>A c.743-296G>A	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120964756
chrX:120964760	T T	TC TC	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG02683.hp2 HG02683.hp2	intron_variant	MODIFIER	c.743-301dupG c.743-301dupG	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120964760
chrX:120964857	AC AC	A A	1	a0001c0002t0002g0038 a0001c0002t0002g0038	1	HG01169.hp1 HG01169.hp1	intron_variant	MODIFIER	c.743-398delG c.743-398delG	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120964857
chrX:120964864	T T	C C	13	a0001c0001t0001g0004 a0001c0001t0001g0009 a0001c0001t0001g0010 others(10): Show a0001c0001t0001g0004 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0005g0032 a0005c0011t0001g0028 a0006c0009t0001g0026 a0009c0013t0001g0030	25	HG00140.hp1 HG00558.hp1 HG00597.hp1 others(22): Show HG00140.hp1 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG00621.hp1 HG01123.hp2 HG01975.hp2 HG01981.hp2 HG02004.hp2 HG02135.hp1 HG02257.hp1 HG02622.hp1 HG02735.hp1 HG02738.hp1 HG03195.hp1 HG03704.hp2 HG04115.hp1 HG06807.hp1 NA18941.hp2 NA18948.hp1 NA18960.hp1 NA18988.hp1 NA18992.hp2 NA19070.hp1 NA19074.hp1	intron_variant	MODIFIER	c.743-404A>G c.743-404A>G	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120964864
chrX:120964889	T T	TC TC	1	a0005c0011t0001g0028 a0005c0011t0001g0028	1	HG02004.hp2 HG02004.hp2	intron_variant	MODIFIER	c.743-430dupG c.743-430dupG	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120964889
chrX:120964978	G G	A A	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	HG01123.hp2 HG01123.hp2	intron_variant	MODIFIER	c.742+370C>T c.742+370C>T	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120964978
chrX:120964993	T T	G G	1	a0001c0001t0001g0011 a0001c0001t0001g0011	2	HG02258.hp1 HG03130.hp1 HG02258.hp1 HG03130.hp1	intron_variant	MODIFIER	c.742+355A>C c.742+355A>C	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120964993
chrX:120965040	C C	G G	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	HG02735.hp1 HG02735.hp1	intron_variant	MODIFIER	c.742+308G>C c.742+308G>C	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120965040
chrX:120965227	C C	T T	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG02135.hp1 HG02135.hp1	intron_variant	MODIFIER	c.742+121G>A c.742+121G>A	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120965227
chrX:120965295	C C	T T	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.742+53G>A c.742+53G>A	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120965295
chrX:120965309	T T	TC TC	1	a0001c0001t0003g0034 a0001c0001t0003g0034	1	HG01515.hp1 HG01515.hp1	intron_variant	MODIFIER	c.742+38dupG c.742+38dupG	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding	1/2	chrX	120965309

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JoGo Online Haplotype Explorer CT47A5_chrX_120958026_120971348

JoGo Local Haplotype Explorer (on iGV) CT47A5_chrX_120958026_120971348

Translation Multiple Alignment View

🧬 Gene Summary (with MANE)

AAmino acid(protein) Level Haplotype Info (Total: 9)

CCoding Level Haplotype Info (Total: 13)

TTranscript Level Haplotype Info (Total: 7)

GGenebody Level Haplotype Info (Total: 39)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 13)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 21)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 39)

Haplotype Details by Sample (Haploid Level) (Total: 130)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 9)

CCoding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 5)

TTranscript Level Haplotype Variants (Exon) (Total: 11)

GGenebody Level Haplotype Variants (Intron) (Total: 21)

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Annotation (Repeats)

Annotation (SNP Array)