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geneid	100130361
ensemblid	ENSG00000215115.7
hgncid	30891
symbol	CXorf49
name	chromosome X open reading frame 49
refseq_nuc	NM_001145140.2
refseq_prot	NP_001138612.1
ensembl_nuc	ENST00000535490.3
ensembl_prot	ENSP00000480355.1
mane_status	MANE Select
chr	chrX
start	71714371
end	71718285
strand	-
ver	v1.2
region	chrX:71714371-71718285
region5000	chrX:71709371-71723285
regionname0	CXorf49_chrX_71714371_71718285
regionname5000	CXorf49_chrX_71709371_71723285

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	514	40	5	15	12	3	5	7	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0002	0/0	514	13	4	1	5	0	3	3	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0003	0/0	514	8	4	2	1	0	1	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0004	0/0	514	2	2	0	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0005	0/0	514	1	0	0	0	0	1	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0006	0/0	65	1	0	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0007	0/0	68	1	0	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0008	0/0	514	1	0	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0009	0/0	500	1	0	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0010	0/0	372	1	0	0	0	0	1	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0011	0/0	209	1	0	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0012	0/0	213	1	0	0	0	0	1	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0013	0/0	515	1	0	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0014	0/0	514	1	0	0	0	0	1	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1545	38	4	14	12	3	5	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0002	0/0	1545	13	4	1	5	0	3	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0003	0/0	1545	8	4	2	1	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0004	0/0	1545	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0005	0/0	1541	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0006	0/0	1544	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0007	0/0	1545	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0008	0/0	1561	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0009	0/0	1546	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0010	0/0	1545	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0011	0/0	1544	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0012	0/0	1545	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0013	0/0	1545	1	0	0	0	1	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0014	0/0	1549	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0015	0/0	1548	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0016	0/0	1545	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
c0017	0/0	1545	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	309	66	13	18	20	4	11	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
t0002	0/0	310	3	0	2	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
t0003	0/0	309	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
t0004	0/0	310	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
t0005	0/0	310	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
t0006	0/0	312	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	28	1	10	11	2	4	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0002	0/0	11	4	1	4	0	2	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0003	0/0	7	4	2	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0004	0/0	3	0	2	0	1	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0005	0/0	2	0	2	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0006	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0007	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0008	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0009	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0010	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0011	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0012	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0013	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0014	0/0	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0015	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0016	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0017	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0018	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0019	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0020	0/0	1	0	0	0	1	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0021	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0022	0/0	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0023	0/0	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0024	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0025	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0026	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
g0027	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1545	38	4	14	12	3	5	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0001c0012	0/0	1545	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0001c0016	0/0	1545	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0002c0002	0/0	1545	13	4	1	5	0	3	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0003c0003	0/0	1545	8	4	2	1	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0004c0007	0/0	1545	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0004c0010	0/0	1545	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0005c0017	0/0	1545	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0006c0006	0/0	1544	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0007c0014	0/0	1549	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0008c0013	0/0	1545	1	0	0	0	1	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0009c0011	0/0	1544	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0010c0009	0/0	1546	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0011c0008	0/0	1561	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0012c0005	0/0	1541	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0013c0015	0/0	1548	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0014c0004	0/0	1545	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1853	33	2	12	11	3	5	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0001c0001t0002	0/0	1854	2	0	2	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0001c0001t0003	0/0	1853	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0001c0001t0004	0/0	1854	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0001c0001t0005	0/0	1854	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0001c0012t0001	0/0	1853	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0001c0016t0001	0/0	1853	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0002c0002t0001	0/0	1853	12	4	1	5	0	2	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0002c0002t0002	0/0	1854	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0003c0003t0001	0/0	1853	8	4	2	1	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0004c0007t0001	0/0	1853	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0004c0010t0001	0/0	1853	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0005c0017t0001	0/0	1853	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0006c0006t0001	0/0	1852	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0007c0014t0001	0/0	1857	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0008c0013t0001	0/0	1853	1	0	0	0	1	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0009c0011t0001	0/0	1852	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0010c0009t0001	0/0	1854	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0011c0008t0001	0/0	1869	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0012c0005t0006	0/0	1852	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0013c0015t0001	0/0	1856	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285
a0014c0004t0001	0/0	1853	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	copy fasta	chrX	71709371	71723285

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	28	1	10	11	2	4	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0001c0001t0001g0004	0/0	3	0	2	0	1	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0001c0001t0001g0015	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0001c0001t0001g0017	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0001c0001t0002g0005	0/0	2	0	2	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0001c0001t0003g0016	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0001c0001t0004g0025	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0001c0001t0005g0027	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0001c0012t0001g0019	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0001c0016t0001g0023	0/0	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0002c0002t0001g0002	0/0	11	4	1	4	0	2	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0002c0002t0001g0007	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0002c0002t0002g0006	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0003c0003t0001g0003	0/0	7	4	2	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0003c0003t0001g0018	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0004c0007t0001g0010	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0004c0010t0001g0013	0/0	1	1	0	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0005c0017t0001g0024	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0006c0006t0001g0009	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0007c0014t0001g0021	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0008c0013t0001g0020	0/0	1	0	0	0	1	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0009c0011t0001g0014	0/0	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0010c0009t0001g0012	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0011c0008t0001g0011	0/0	1	0	0	1	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0012c0005t0006g0026	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0013c0015t0001g0022	0/0	1	0	1	0	0	0	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
a0014c0004t0001g0008	0/0	1	0	0	0	0	1	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0004	EUR	GBR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG00099	hp2	a0008	c0013	t0001	g0020	EUR	GBR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG00558	hp1	a0007	c0014	t0001	g0021	EAS	CHS	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG00558	hp2	a0006	c0006	t0001	g0009	EAS	CHS	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG00621	hp1	a0011	c0008	t0001	g0011	EAS	CHS	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG00673	hp1	a0002	c0002	t0001	g0002	EAS	CHS	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG00735	hp1	a0013	c0015	t0001	g0022	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG00735	hp2	a0001	c0001	t0001	g0004	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01106	hp1	a0001	c0001	t0001	g0004	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01169	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01169	hp2	a0009	c0011	t0001	g0014	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01175	hp1	a0001	c0001	t0002	g0005	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01175	hp2	a0001	c0001	t0002	g0005	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01243	hp1	a0002	c0002	t0001	g0002	AMR	PUR	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01255	hp1	a0001	c0016	t0001	g0023	AMR	CLM	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01261	hp2	a0001	c0001	t0001	g0001	AMR	CLM	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01346	hp1	a0003	c0003	t0001	g0003	AMR	CLM	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01346	hp2	a0003	c0003	t0001	g0003	AMR	CLM	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02055	hp1	a0001	c0001	t0003	g0016	AFR	ACB	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02074	hp1	a0002	c0002	t0001	g0007	EAS	KHV	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02647	hp2	a0003	c0003	t0001	g0003	AFR	GWD	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02683	hp1	a0012	c0005	t0006	g0026	SAS	PJL	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02809	hp1	a0002	c0002	t0001	g0002	AFR	GWD	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02809	hp2	a0003	c0003	t0001	g0003	AFR	GWD	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG02965	hp2	a0001	c0012	t0001	g0019	AFR	ESN	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG03017	hp1	a0001	c0001	t0001	g0015	SAS	PJL	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG03139	hp1	a0002	c0002	t0001	g0002	AFR	ESN	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG03225	hp1	a0004	c0010	t0001	g0013	AFR	MSL	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG03486	hp1	a0002	c0002	t0001	g0002	AFR	MSL	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG03486	hp2	a0001	c0001	t0001	g0017	AFR	MSL	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG03492	hp1	a0002	c0002	t0002	g0006	SAS	PJL	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG03540	hp1	a0001	c0001	t0005	g0027	AFR	GWD	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG03540	hp2	a0003	c0003	t0001	g0003	AFR	GWD	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG03579	hp1	a0003	c0003	t0001	g0003	AFR	MSL	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG03942	hp1	a0002	c0002	t0001	g0002	SAS	BEB	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG04184	hp1	a0010	c0009	t0001	g0012	SAS	BEB	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG04184	hp2	a0014	c0004	t0001	g0008	SAS	BEB	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG04199	hp2	a0005	c0017	t0001	g0024	SAS	STU	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
HG04204	hp1	a0002	c0002	t0001	g0002	SAS	STU	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA18971	hp1	a0002	c0002	t0001	g0002	EAS	JPT	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA18983	hp1	a0002	c0002	t0001	g0002	EAS	JPT	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA19000	hp1	a0003	c0003	t0001	g0018	EAS	JPT	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA19030	hp1	a0001	c0001	t0001	g0001	AFR	LWK	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA19030	hp2	a0004	c0007	t0001	g0010	AFR	LWK	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA19043	hp1	a0002	c0002	t0001	g0002	AFR	LWK	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA19067	hp1	a0002	c0002	t0001	g0002	EAS	JPT	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA19089	hp1	a0001	c0001	t0004	g0025	EAS	JPT	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285
NA20905	hp1	a0003	c0003	t0001	g0003	SAS	GIH	CXorf49_chrX_71709371_71723285	CXorf49	chrX	71709371	71723285

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:71715593	TC TC	T T	1	a0009 a0009	1	HG01169.hp2 HG01169.hp2	frameshift_variant	HIGH	c.1439delG c.1439delG	p.Gly480fs p.Gly480fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	3/6	1573/1854	1439/1545	480/514	chrX	71715593
chrX:71716242	G G	C C	1	a0009 a0009	1	HG01169.hp2 HG01169.hp2	missense_variant	MODERATE	c.1334C>G c.1334C>G	p.Ser445Trp p.Ser445Trp	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	2/6	1468/1854	1334/1545	445/514	chrX	71716242
chrX:71716937	TG TG	T T	1	a0007 a0007	1	HG00558.hp1 HG00558.hp1	frameshift_variant	HIGH	c.1214delC c.1214delC	p.Pro405fs p.Pro405fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	1348/1854	1214/1545	405/514	chrX	71716937
chrX:71716952	A A	AT AT	1	a0007 a0007	1	HG00558.hp1 HG00558.hp1	frameshift_variant	HIGH	c.1199dupA c.1199dupA	p.Asn400fs p.Asn400fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	1333/1854	1199/1545	400/514	chrX	71716952
chrX:71717024	G G	GC GC	1	a0007 a0007	1	HG00558.hp1 HG00558.hp1	frameshift_variant	HIGH	c.1127dupG c.1127dupG	p.Ser376fs p.Ser376fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	1261/1854	1127/1545	376/514	chrX	71717024
chrX:71717059	TC TC	T T	1	a0006 a0006	1	HG00558.hp2 HG00558.hp2	frameshift_variant	HIGH	c.1092delG c.1092delG	p.Met365fs p.Met365fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	1226/1854	1092/1545	364/514	chrX	71717059
chrX:71717087	C C	CG CG	1	a0007 a0007	1	HG00558.hp1 HG00558.hp1	frameshift_variant	HIGH	c.1064dupC c.1064dupC	p.Pro356fs p.Pro356fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	1198/1854	1064/1545	355/514	chrX	71717087
chrX:71717154	A A	G G	7	a0002 a0003 a0004 others(4): Show a0002 a0003 a0004 a0006 a0009 a0012 a0014	27	HG00558.hp2 HG00673.hp1 HG01169.hp2 others(24): Show HG00558.hp2 HG00673.hp1 HG01169.hp2 HG01243.hp1 HG01346.hp1 HG01346.hp2 HG02074.hp1 HG02647.hp2 HG02683.hp1 HG02809.hp1 HG02809.hp2 HG03139.hp1 HG03225.hp1 HG03486.hp1 HG03492.hp1 HG03540.hp2 HG03579.hp1 HG03942.hp1 HG04184.hp2 HG04204.hp1 NA18971.hp1 NA18983.hp1 NA19000.hp1 NA19030.hp2 NA19043.hp1 NA19067.hp1 NA20905.hp1	missense_variant	MODERATE	c.998T>C c.998T>C	p.Leu333Pro p.Leu333Pro	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	1132/1854	998/1545	333/514	chrX	71717154
chrX:71717163	T T	TGA TGA	1	a0007 a0007	1	HG00558.hp1 HG00558.hp1	frameshift_variant	HIGH	c.987_988dupTC c.987_988dupTC	p.Gln330fs p.Gln330fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	1122/1854	988/1545	330/514	chrX	71717163
chrX:71717178	A A	AG AG	1	a0010 a0010	1	HG04184.hp1 HG04184.hp1	frameshift_variant	HIGH	c.973dupC c.973dupC	p.Leu325fs p.Leu325fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	1107/1854	973/1545	325/514	chrX	71717178
chrX:71717229	G G	GC GC	1	a0007 a0007	1	HG00558.hp1 HG00558.hp1	frameshift_variant	HIGH	c.922dupG c.922dupG	p.Ala308fs p.Ala308fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	1056/1854	922/1545	308/514	chrX	71717229
chrX:71717273	CT CT	C C	1	a0007 a0007	1	HG00558.hp1 HG00558.hp1	frameshift_variant	HIGH	c.878delA c.878delA	p.Lys293fs p.Lys293fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	1012/1854	878/1545	293/514	chrX	71717273
chrX:71717307	G G	A A	3	a0003 a0006 a0012 a0003 a0006 a0012	10	HG00558.hp2 HG01346.hp1 HG01346.hp2 others(7): Show HG00558.hp2 HG01346.hp1 HG01346.hp2 HG02647.hp2 HG02683.hp1 HG02809.hp2 HG03540.hp2 HG03579.hp1 NA19000.hp1 NA20905.hp1	missense_variant	MODERATE	c.845C>T c.845C>T	p.Pro282Leu p.Pro282Leu	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	979/1854	845/1545	282/514	chrX	71717307
chrX:71717447	CT CT	C C	1	a0006 a0006	1	HG00558.hp2 HG00558.hp2	frameshift_variant	HIGH	c.704delA c.704delA	p.Lys235fs p.Lys235fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	838/1854	704/1545	235/514	chrX	71717447
chrX:71717545	C C	CGTGGGTA others(9): Show CGTGGGTAGGCAGCCTG	1	a0011 a0011	1	HG00621.hp1 HG00621.hp1	frameshift_variant	HIGH	c.591_606dupCAGGCTGC others(8): Show c.591_606dupCAGGCTGCCTACCCAC	p.Asp203fs p.Asp203fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	740/1854	606/1545	202/514	chrX	71717545
chrX:71717657	A A	AG AG	1	a0007 a0007	1	HG00558.hp1 HG00558.hp1	frameshift_variant	HIGH	c.494dupC c.494dupC	p.Gly166fs p.Gly166fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	628/1854	494/1545	165/514	chrX	71717657
chrX:71717676	C C	G G	1	a0005 a0005	1	HG04199.hp2 HG04199.hp2	missense_variant	MODERATE	c.476G>C c.476G>C	p.Arg159Pro p.Arg159Pro	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	610/1854	476/1545	159/514	chrX	71717676
chrX:71717705	AG AG	A A	1	a0012 a0012	1	HG02683.hp1 HG02683.hp1	frameshift_variant	HIGH	c.446delC c.446delC	p.Pro149fs p.Pro149fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	580/1854	446/1545	149/514	chrX	71717705
chrX:71717724	T T	C C	3	a0003 a0006 a0012 a0003 a0006 a0012	10	HG00558.hp2 HG01346.hp1 HG01346.hp2 others(7): Show HG00558.hp2 HG01346.hp1 HG01346.hp2 HG02647.hp2 HG02683.hp1 HG02809.hp2 HG03540.hp2 HG03579.hp1 NA19000.hp1 NA20905.hp1	missense_variant	MODERATE	c.428A>G c.428A>G	p.Asp143Gly p.Asp143Gly	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	562/1854	428/1545	143/514	chrX	71717724
chrX:71717773	C C	A A	1	a0014 a0014	1	HG04184.hp2 HG04184.hp2	missense_variant	MODERATE	c.379G>T c.379G>T	p.Gly127Trp p.Gly127Trp	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	513/1854	379/1545	127/514	chrX	71717773
chrX:71717892	G G	A A	1	a0008 a0008	1	HG00099.hp2 HG00099.hp2	missense_variant	MODERATE	c.260C>T c.260C>T	p.Pro87Leu p.Pro87Leu	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	394/1854	260/1545	87/514	chrX	71717892
chrX:71717913	CG CG	C C	1	a0007 a0007	1	HG00558.hp1 HG00558.hp1	frameshift_variant	HIGH	c.238delC c.238delC	p.Arg80fs p.Arg80fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	372/1854	238/1545	80/514	chrX	71717913
chrX:71717925	A A	AC AC	1	a0007 a0007	1	HG00558.hp1 HG00558.hp1	frameshift_variant	HIGH	c.226dupG c.226dupG	p.Val76fs p.Val76fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	360/1854	226/1545	76/514	chrX	71717925
chrX:71717947	AT AT	A A	1	a0007 a0007	1	HG00558.hp1 HG00558.hp1	frameshift_variant	HIGH	c.204delA c.204delA	p.Glu68fs p.Glu68fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	338/1854	204/1545	68/514	chrX	71717947
chrX:71717972	GC GC	G G	1	a0012 a0012	1	HG02683.hp1 HG02683.hp1	frameshift_variant	HIGH	c.179delG c.179delG	p.Gly60fs p.Gly60fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	313/1854	179/1545	60/514	chrX	71717972
chrX:71717989	A A	AC AC	1	a0013 a0013	1	HG00735.hp1 HG00735.hp1	frameshift_variant	HIGH	c.162dupG c.162dupG	p.Phe55fs p.Phe55fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	296/1854	162/1545	54/514	chrX	71717989
chrX:71718024	A A	AC AC	2	a0006 a0013 a0006 a0013	2	HG00558.hp2 HG00735.hp1 HG00558.hp2 HG00735.hp1	frameshift_variant	HIGH	c.127dupG c.127dupG	p.Val43fs p.Val43fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	261/1854	127/1545	43/514	chrX	71718024
chrX:71718024	AC AC	A A	1	a0012 a0012	1	HG02683.hp1 HG02683.hp1	frameshift_variant	HIGH	c.127delG c.127delG	p.Val43fs p.Val43fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	261/1854	127/1545	43/514	chrX	71718024
chrX:71718051	GC GC	G G	1	a0012 a0012	1	HG02683.hp1 HG02683.hp1	frameshift_variant	HIGH	c.100delG c.100delG	p.Ala34fs p.Ala34fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	234/1854	100/1545	34/514	chrX	71718051
chrX:71718122	A A	C C	2	a0002 a0014 a0002 a0014	14	HG00673.hp1 HG01243.hp1 HG02074.hp1 others(11): Show HG00673.hp1 HG01243.hp1 HG02074.hp1 HG02809.hp1 HG03139.hp1 HG03486.hp1 HG03492.hp1 HG03942.hp1 HG04184.hp2 HG04204.hp1 NA18971.hp1 NA18983.hp1 NA19043.hp1 NA19067.hp1	missense_variant	MODERATE	c.30T>G c.30T>G	p.Cys10Trp p.Cys10Trp	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	164/1854	30/1545	10/514	chrX	71718122
chrX:71718123	C C	CA CA	1	a0013 a0013	1	HG00735.hp1 HG00735.hp1	frameshift_variant	HIGH	c.28dupT c.28dupT	p.Cys10fs p.Cys10fs	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	162/1854	28/1545	10/514	chrX	71718123
chrX:71718144	G G	A A	1	a0005 a0005	1	HG04199.hp2 HG04199.hp2	missense_variant	MODERATE	c.8C>T c.8C>T	p.Ser3Phe p.Ser3Phe	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	142/1854	8/1545	3/514	chrX	71718144

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:71717240	A A	G G	17	a0001c0001 a0001c0012 a0001c0016 others(14): Show a0001c0001 a0001c0012 a0001c0016 a0002c0002 a0003c0003 a0004c0007 a0004c0010 a0005c0017 a0006c0006 a0007c0014 a0008c0013 a0009c0011 a0010c0009 a0011c0008 a0012c0005 a0013c0015 a0014c0004	73	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(70): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01106.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01515.hp1 HG01952.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02074.hp1 HG02135.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02965.hp2 HG03017.hp1 HG03139.hp1 HG03225.hp1 HG03486.hp1 HG03486.hp2 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp2 HG04204.hp1 NA18747.hp1 NA18952.hp1 NA18971.hp1 NA18983.hp1 NA18984.hp1 NA18995.hp1 NA19000.hp1 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19067.hp1 NA19083.hp1 NA19089.hp1 NA19091.hp1 NA20905.hp1	synonymous_variant	LOW	c.912T>C c.912T>C	p.Ala304Ala p.Ala304Ala	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	1046/1854	912/1545	304/514	chrX	71717240
chrX:71717573	C C	T T	1	a0004c0007 a0004c0007	1	NA19030.hp2 NA19030.hp2	synonymous_variant	LOW	c.579G>A c.579G>A	p.Ala193Ala p.Ala193Ala	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	713/1854	579/1545	193/514	chrX	71717573
chrX:71717783	G G	A A	1	a0001c0012 a0001c0012	1	HG02965.hp2 HG02965.hp2	synonymous_variant	LOW	c.369C>T c.369C>T	p.Ala123Ala p.Ala123Ala	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	503/1854	369/1545	123/514	chrX	71717783
chrX:71718128	G G	A A	1	a0001c0016 a0001c0016	1	HG01255.hp1 HG01255.hp1	synonymous_variant	LOW	c.24C>T c.24C>T	p.Ser8Ser p.Ser8Ser	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	158/1854	24/1545	8/514	chrX	71718128

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:71714407	C C	T T	1	a0001c0001t0003 a0001c0001t0003	1	HG02055.hp1 HG02055.hp1	3_prime_UTR_variant	MODIFIER	c.139G>A c.139G>A	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	6/6	245	chrX	71714407
chrX:71718224	C C	CA CA	1	a0001c0001t0004 a0001c0001t0004	1	NA19089.hp1 NA19089.hp1	5_prime_UTR_variant	MODIFIER	c.-74dupT c.-74dupT	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	74	chrX	71718224
chrX:71718231	G G	GC GC	1	a0012c0005t0006 a0012c0005t0006	1	HG02683.hp1 HG02683.hp1	5_prime_UTR_variant	MODIFIER	c.-81dupG c.-81dupG	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	81	chrX	71718231
chrX:71718281	A A	AC AC	2	a0001c0001t0002 a0002c0002t0002 a0001c0001t0002 a0002c0002t0002	3	HG01175.hp1 HG01175.hp2 HG03492.hp1 HG01175.hp1 HG01175.hp2 HG03492.hp1	5_prime_UTR_variant	MODIFIER	c.-131dupG c.-131dupG	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	131	chrX	71718281
chrX:71718283	C C	CA CA	1	a0001c0001t0005 a0001c0001t0005	1	HG03540.hp1 HG03540.hp1	5_prime_UTR_variant	MODIFIER	c.-133_-132insT c.-133_-132insT	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	133	chrX	71718283
chrX:71718284	G G	GCC GCC	1	a0012c0005t0006 a0012c0005t0006	1	HG02683.hp1 HG02683.hp1	5_prime_UTR_variant	MODIFIER	c.-134_-133insGG c.-134_-133insGG	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/6	134	chrX	71718284

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:71714813	A A	G G	1	a0001c0001t0001g0004 a0001c0001t0001g0004	3	HG00099.hp1 HG00735.hp2 HG01106.hp1 HG00099.hp1 HG00735.hp2 HG01106.hp1	intron_variant	MODIFIER	c.1505-121T>C c.1505-121T>C	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	4/5	chrX	71714813
chrX:71714952	A A	G G	26	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0015 others(23): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0015 a0001c0001t0002g0005 a0001c0001t0003g0016 a0001c0001t0004g0025 a0001c0001t0005g0027 a0001c0012t0001g0019 a0001c0016t0001g0023 a0002c0002t0001g0002 a0002c0002t0001g0007 a0002c0002t0002g0006 a0003c0003t0001g0003 a0003c0003t0001g0018 a0004c0007t0001g0010 a0004c0010t0001g0013 a0005c0017t0001g0024 a0006c0006t0001g0009 a0007c0014t0001g0021 a0008c0013t0001g0020 a0009c0011t0001g0014 a0010c0009t0001g0012 a0011c0008t0001g0011 a0012c0005t0006g0026 a0013c0015t0001g0022 a0014c0004t0001g0008	72	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(69): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG01069.hp1 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01106.hp1 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01515.hp1 HG01952.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02074.hp1 HG02135.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02965.hp2 HG03017.hp1 HG03139.hp1 HG03225.hp1 HG03486.hp1 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03942.hp1 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp2 HG04204.hp1 NA18747.hp1 NA18952.hp1 NA18971.hp1 NA18983.hp1 NA18984.hp1 NA18995.hp1 NA19000.hp1 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19067.hp1 NA19083.hp1 NA19089.hp1 NA19091.hp1 NA20905.hp1	intron_variant	MODIFIER	c.1505-260T>C c.1505-260T>C	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	4/5	chrX	71714952
chrX:71715548	A A	G G	1	a0009c0011t0001g0014 a0009c0011t0001g0014	1	HG01169.hp2 HG01169.hp2	intron_variant	MODIFIER	c.1458+27T>C c.1458+27T>C	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	3/5	chrX	71715548
chrX:71715893	C C	T T	1	a0002c0002t0001g0007 a0002c0002t0001g0007	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.1382-242G>A c.1382-242G>A	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	2/5	chrX	71715893
chrX:71715981	C C	T T	1	a0004c0007t0001g0010 a0004c0007t0001g0010	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.1381+214G>A c.1381+214G>A	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	2/5	chrX	71715981
chrX:71715995	G G	GC GC	1	a0010c0009t0001g0012 a0010c0009t0001g0012	1	HG04184.hp1 HG04184.hp1	intron_variant	MODIFIER	c.1381+199dupG c.1381+199dupG	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	2/5	chrX	71715995
chrX:71716057	A A	AC AC	2	a0001c0001t0001g0015 a0003c0003t0001g0018 a0001c0001t0001g0015 a0003c0003t0001g0018	2	HG03017.hp1 NA19000.hp1 HG03017.hp1 NA19000.hp1	intron_variant	MODIFIER	c.1381+137dupG c.1381+137dupG	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	2/5	chrX	71716057
chrX:71716103	G G	A A	1	a0005c0017t0001g0024 a0005c0017t0001g0024	1	HG04199.hp2 HG04199.hp2	intron_variant	MODIFIER	c.1381+92C>T c.1381+92C>T	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	2/5	chrX	71716103
chrX:71716154	A A	AC AC	1	a0002c0002t0002g0006 a0002c0002t0002g0006	1	HG03492.hp1 HG03492.hp1	intron_variant	MODIFIER	c.1381+40dupG c.1381+40dupG	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	2/5	chrX	71716154
chrX:71716408	G G	C C	1	a0004c0010t0001g0013 a0004c0010t0001g0013	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.1225-57C>G c.1225-57C>G	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/5	chrX	71716408
chrX:71716445	A A	G G	1	a0001c0012t0001g0019 a0001c0012t0001g0019	1	HG02965.hp2 HG02965.hp2	intron_variant	MODIFIER	c.1225-94T>C c.1225-94T>C	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/5	chrX	71716445
chrX:71716554	T T	C C	1	a0004c0007t0001g0010 a0004c0007t0001g0010	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.1225-203A>G c.1225-203A>G	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/5	chrX	71716554
chrX:71716779	C C	T T	1	a0004c0010t0001g0013 a0004c0010t0001g0013	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.1224+149G>A c.1224+149G>A	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/5	chrX	71716779
chrX:71716788	T T	TTC TTC	1	a0007c0014t0001g0021 a0007c0014t0001g0021	1	HG00558.hp1 HG00558.hp1	intron_variant	MODIFIER	c.1224+138_1224+139d others(4): Show c.1224+138_1224+139dupGA	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/5	chrX	71716788
chrX:71716888	AG AG	A A	1	a0007c0014t0001g0021 a0007c0014t0001g0021	1	HG00558.hp1 HG00558.hp1	intron_variant	MODIFIER	c.1224+39delC c.1224+39delC	CXorf49	ENSG00000215115.7	transcript	ENST00000535490.3	protein_coding	1/5	chrX	71716888

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🧬 JoGo Online Haplotype Explorer CXorf49_chrX_71709371_71723285

JoGo Local Haplotype Explorer (on iGV) CXorf49_chrX_71709371_71723285

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 14)

CCoding Level Haplotype Info (Total: 17)

TTranscript Level Haplotype Info (Total: 6)

GGenebody Level Haplotype Info (Total: 27)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 17)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 22)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 27)

Haplotype Details by Sample (Haploid Level) (Total: 73)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 32)

CCoding Level Variants (Synonymous Mutations) (Total: 4)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 6)

GGenebody Level Haplotype Variants (Intron) (Total: 15)

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Annotation (Repeats)

Annotation (SNP Array)