Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	728373
ensemblid	ENSG00000230430.5
hgncid	44452
symbol	USP17L25
name	ubiquitin specific peptidase 17 like family member 25
refseq_nuc	NM_001242326.1
refseq_prot	NP_001229255.1
ensembl_nuc	ENST00000509271.1
ensembl_prot	ENSP00000422097.1
mane_status	MANE Select
chr	chr4
start	9329911
end	9331503
strand	+
ver	v1.2
region	chr4:9329911-9331503
region5000	chr4:9324911-9336503
regionname0	USP17L25_chr4_9329911_9331503
regionname5000	USP17L25_chr4_9324911_9336503

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	EAS	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	530	10	0	10	0	10	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0002	0/0	469	5	0	1	4	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0003	0/0	97	3	0	3	0	3	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0004	0/0	530	2	1	1	0	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0005	0/0	530	2	0	2	0	2	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0006	0/0	530	1	1	0	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0007	0/0	530	1	1	0	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0008	0/0	51	1	0	1	0	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0009	0/0	530	1	1	0	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0010	0/0	530	1	0	1	0	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0011	0/0	530	1	0	1	0	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0012	0/0	530	1	0	1	0	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0013	0/0	469	1	0	1	0	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0014	0/0	327	1	0	1	0	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0015	0/0	530	1	0	1	0	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	EAS	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1593	4	0	4	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0002	0/0	1593	4	0	1	3	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0003	0/0	1592	3	0	3	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0004	0/0	1593	2	0	2	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0005	0/0	1593	2	0	2	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0006	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0007	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0008	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0009	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0010	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0011	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0012	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0013	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0014	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0015	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0016	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0017	0/0	1593	1	0	0	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0018	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0019	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0020	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0021	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
c0022	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	0/0	32	4	0	24	0	4	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	EAS	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1593	4	0	4	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0001c0005	0/0	1593	2	0	2	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0001c0015	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0001c0016	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0001c0020	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0001c0021	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0002c0002	0/0	1593	4	0	1	3	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0002c0017	0/0	1593	1	0	0	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0003c0003	0/0	1592	3	0	3	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0004c0008	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0004c0009	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0005c0004	0/0	1593	2	0	2	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0006c0007	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0007c0006	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0008c0014	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0009c0013	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0010c0012	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0011c0022	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0012c0010	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0013c0018	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0014c0011	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0015c0019	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503

acthapid	grch38 chm13v2	tlen	total	AFR	EAS	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0000	0/0	1593	4	0	4	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0001c0005t0000	0/0	1593	2	0	2	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0001c0015t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0001c0016t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0001c0020t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0001c0021t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0002c0002t0000	0/0	1593	4	0	1	3	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0002c0017t0000	0/0	1593	1	0	0	1	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0003c0003t0000	0/0	1592	3	0	3	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0004c0008t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0004c0009t0000	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0005c0004t0000	0/0	1593	2	0	2	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0006c0007t0000	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0007c0006t0000	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0008c0014t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0009c0013t0000	0/0	1593	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0010c0012t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0011c0022t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0012c0010t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0013c0018t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0014c0011t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503
a0015c0019t0000	0/0	1593	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	copy fasta	chr4	9324911	9336503

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	EAS	SAS	regionname	genename	chr	start	end
a0001c0001t0000g0000	0/0	4	0	4	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0001c0005t0000g0000	0/0	2	0	2	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0001c0015t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0001c0016t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0001c0020t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0001c0021t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0002c0002t0000g0000	0/0	4	0	1	3	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0002c0017t0000g0000	0/0	1	0	0	1	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0003c0003t0000g0000	0/0	3	0	3	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0004c0008t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0004c0009t0000g0000	0/0	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0005c0004t0000g0000	0/0	2	0	2	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0006c0007t0000g0000	0/0	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0007c0006t0000g0000	0/0	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0008c0014t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0009c0013t0000g0000	0/0	1	1	0	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0010c0012t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0011c0022t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0012c0010t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0013c0018t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0014c0011t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
a0015c0019t0000g0000	0/0	1	0	1	0	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG01891	hp1	a0007	c0006	t0000	g0000	AFR	ACB	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
HG01891	hp2	a0004	c0009	t0000	g0000	AFR	ACB	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
HG02895	hp1	a0006	c0007	t0000	g0000	AFR	GWD	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
HG02895	hp2	a0009	c0013	t0000	g0000	AFR	GWD	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
HG03942	hp1	a0002	c0017	t0000	g0000	SAS	BEB	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
HG03942	hp2	a0002	c0002	t0000	g0000	SAS	BEB	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
HG04204	hp1	a0002	c0002	t0000	g0000	SAS	STU	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
HG04204	hp2	a0002	c0002	t0000	g0000	SAS	STU	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18963	hp1	a0001	c0005	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18963	hp2	a0001	c0005	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18965	hp1	a0011	c0022	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18965	hp2	a0015	c0019	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18972	hp1	a0003	c0003	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18972	hp2	a0008	c0014	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18978	hp1	a0012	c0010	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18978	hp2	a0001	c0021	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18985	hp1	a0001	c0001	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18985	hp2	a0005	c0004	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18986	hp1	a0001	c0020	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18986	hp2	a0004	c0008	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18988	hp1	a0001	c0015	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18988	hp2	a0001	c0016	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18989	hp1	a0010	c0012	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18989	hp2	a0014	c0011	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18998	hp1	a0001	c0001	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18998	hp2	a0002	c0002	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA19055	hp1	a0001	c0001	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA19055	hp2	a0005	c0004	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA19062	hp1	a0003	c0003	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA19062	hp2	a0001	c0001	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18955	hp1	a0003	c0003	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503
NA18955	hp2	a0013	c0018	t0000	g0000	EAS	JPT	USP17L25_chr4_9324911_9336503	USP17L25	chr4	9324911	9336503

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr4:9329935	A A	G G	15	a0001 a0002 a0003 others(12): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0009 a0010 a0011 a0012 a0013 a0014 a0015	32	HG01891.hp1 HG01891.hp2 HG02895.hp1 others(29): Show HG01891.hp1 HG01891.hp2 HG02895.hp1 HG02895.hp2 HG03942.hp1 HG03942.hp2 HG04204.hp1 HG04204.hp2 NA18955.hp1 NA18955.hp2 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18965.hp2 NA18972.hp1 NA18972.hp2 NA18978.hp1 NA18978.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA18989.hp2 NA18998.hp1 NA18998.hp2 NA19055.hp1 NA19055.hp2 NA19062.hp1 NA19062.hp2	missense_variant	MODERATE	c.25A>G c.25A>G	p.Arg9Gly p.Arg9Gly	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	25/1593	25/1593	9/530	chr4	9329935
chr4:9329937	A A	T T	2	a0003 a0011 a0003 a0011	4	NA18955.hp1 NA18965.hp1 NA18972.hp1 others(1): Show NA18955.hp1 NA18965.hp1 NA18972.hp1 NA19062.hp1	missense_variant	MODERATE	c.27A>T c.27A>T	p.Arg9Ser p.Arg9Ser	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	27/1593	27/1593	9/530	chr4	9329937
chr4:9329977	T T	C C	3	a0004 a0006 a0007 a0004 a0006 a0007	4	HG01891.hp1 HG01891.hp2 HG02895.hp1 others(1): Show HG01891.hp1 HG01891.hp2 HG02895.hp1 NA18986.hp2	missense_variant	MODERATE	c.67T>C c.67T>C	p.Ser23Pro p.Ser23Pro	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	67/1593	67/1593	23/530	chr4	9329977
chr4:9330066	T T	A A	1	a0008 a0008	1	NA18972.hp2 NA18972.hp2	stop_gained	HIGH	c.156T>A c.156T>A	p.Cys52* p.Cys52*	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	156/1593	156/1593	52/530	chr4	9330066
chr4:9330185	AC AC	A A	1	a0003 a0003	3	NA18955.hp1 NA18972.hp1 NA19062.hp1 NA18955.hp1 NA18972.hp1 NA19062.hp1	frameshift_variant	HIGH	c.276delC c.276delC	p.Asn92fs p.Asn92fs	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	276/1593	276/1593	92/530	chr4	9330185
chr4:9330215	C C	T T	1	a0009 a0009	1	HG02895.hp2 HG02895.hp2	missense_variant	MODERATE	c.305C>T c.305C>T	p.Pro102Leu p.Pro102Leu	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	305/1593	305/1593	102/530	chr4	9330215
chr4:9330311	G G	T T	1	a0010 a0010	1	NA18989.hp1 NA18989.hp1	missense_variant	MODERATE	c.401G>T c.401G>T	p.Arg134Leu p.Arg134Leu	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	401/1593	401/1593	134/530	chr4	9330311
chr4:9330427	A A	G G	1	a0011 a0011	1	NA18965.hp1 NA18965.hp1	missense_variant	MODERATE	c.517A>G c.517A>G	p.Lys173Glu p.Lys173Glu	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	517/1593	517/1593	173/530	chr4	9330427
chr4:9330458	T T	C C	3	a0005 a0010 a0012 a0005 a0010 a0012	4	NA18978.hp1 NA18985.hp2 NA18989.hp1 others(1): Show NA18978.hp1 NA18985.hp2 NA18989.hp1 NA19055.hp2	missense_variant	MODERATE	c.548T>C c.548T>C	p.Val183Ala p.Val183Ala	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	548/1593	548/1593	183/530	chr4	9330458
chr4:9330520	C C	G G	1	a0013 a0013	1	NA18955.hp2 NA18955.hp2	missense_variant	MODERATE	c.610C>G c.610C>G	p.Gln204Glu p.Gln204Glu	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	610/1593	610/1593	204/530	chr4	9330520
chr4:9330544	G G	C C	2	a0006 a0007 a0006 a0007	2	HG01891.hp1 HG02895.hp1 HG01891.hp1 HG02895.hp1	missense_variant	MODERATE	c.634G>C c.634G>C	p.Gly212Arg p.Gly212Arg	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	634/1593	634/1593	212/530	chr4	9330544
chr4:9330598	G G	A A	1	a0008 a0008	1	NA18972.hp2 NA18972.hp2	missense_variant	MODERATE	c.688G>A c.688G>A	p.Ala230Thr p.Ala230Thr	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	688/1593	688/1593	230/530	chr4	9330598
chr4:9330671	G G	C C	1	a0011 a0011	1	NA18965.hp1 NA18965.hp1	missense_variant	MODERATE	c.761G>C c.761G>C	p.Cys254Ser p.Cys254Ser	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	761/1593	761/1593	254/530	chr4	9330671
chr4:9330839	C C	A A	12	a0001 a0003 a0004 others(9): Show a0001 a0003 a0004 a0005 a0006 a0007 a0008 a0010 a0011 a0012 a0014 a0015	25	HG01891.hp1 HG01891.hp2 HG02895.hp1 others(22): Show HG01891.hp1 HG01891.hp2 HG02895.hp1 NA18955.hp1 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18965.hp2 NA18972.hp1 NA18972.hp2 NA18978.hp1 NA18978.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA18989.hp2 NA18998.hp1 NA19055.hp1 NA19055.hp2 NA19062.hp1 NA19062.hp2	missense_variant	MODERATE	c.929C>A c.929C>A	p.Pro310Gln p.Pro310Gln	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	929/1593	929/1593	310/530	chr4	9330839
chr4:9330890	G G	A A	1	a0008 a0008	1	NA18972.hp2 NA18972.hp2	missense_variant	MODERATE	c.980G>A c.980G>A	p.Gly327Glu p.Gly327Glu	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	980/1593	980/1593	327/530	chr4	9330890
chr4:9330894	G G	A A	1	a0014 a0014	1	NA18989.hp2 NA18989.hp2	stop_gained	HIGH	c.984G>A c.984G>A	p.Trp328* p.Trp328*	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	984/1593	984/1593	328/530	chr4	9330894
chr4:9330914	A A	G G	1	a0006 a0006	1	HG02895.hp1 HG02895.hp1	missense_variant	MODERATE	c.1004A>G c.1004A>G	p.Tyr335Cys p.Tyr335Cys	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1004/1593	1004/1593	335/530	chr4	9330914
chr4:9330979	T T	G G	4	a0003 a0008 a0011 others(1): Show a0003 a0008 a0011 a0015	6	NA18955.hp1 NA18965.hp1 NA18965.hp2 others(3): Show NA18955.hp1 NA18965.hp1 NA18965.hp2 NA18972.hp1 NA18972.hp2 NA19062.hp1	missense_variant	MODERATE	c.1069T>G c.1069T>G	p.Ser357Ala p.Ser357Ala	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1069/1593	1069/1593	357/530	chr4	9330979
chr4:9331001	G G	C C	3	a0004 a0006 a0007 a0004 a0006 a0007	4	HG01891.hp1 HG01891.hp2 HG02895.hp1 others(1): Show HG01891.hp1 HG01891.hp2 HG02895.hp1 NA18986.hp2	missense_variant	MODERATE	c.1091G>C c.1091G>C	p.Ser364Thr p.Ser364Thr	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1091/1593	1091/1593	364/530	chr4	9331001
chr4:9331144	C C	T T	2	a0005 a0010 a0005 a0010	3	NA18985.hp2 NA18989.hp1 NA19055.hp2 NA18985.hp2 NA18989.hp1 NA19055.hp2	missense_variant	MODERATE	c.1234C>T c.1234C>T	p.His412Tyr p.His412Tyr	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1234/1593	1234/1593	412/530	chr4	9331144
chr4:9331182	G G	C C	1	a0011 a0011	1	NA18965.hp1 NA18965.hp1	missense_variant	MODERATE	c.1272G>C c.1272G>C	p.Leu424Phe p.Leu424Phe	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1272/1593	1272/1593	424/530	chr4	9331182
chr4:9331200	G G	C C	3	a0004 a0006 a0007 a0004 a0006 a0007	4	HG01891.hp1 HG01891.hp2 HG02895.hp1 others(1): Show HG01891.hp1 HG01891.hp2 HG02895.hp1 NA18986.hp2	missense_variant	MODERATE	c.1290G>C c.1290G>C	p.Gln430His p.Gln430His	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1290/1593	1290/1593	430/530	chr4	9331200
chr4:9331217	A A	G G	1	a0015 a0015	1	NA18965.hp2 NA18965.hp2	missense_variant	MODERATE	c.1307A>G c.1307A>G	p.His436Arg p.His436Arg	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1307/1593	1307/1593	436/530	chr4	9331217
chr4:9331276	G G	A A	1	a0008 a0008	1	NA18972.hp2 NA18972.hp2	missense_variant	MODERATE	c.1366G>A c.1366G>A	p.Glu456Lys p.Glu456Lys	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1366/1593	1366/1593	456/530	chr4	9331276
chr4:9331318	A A	T T	2	a0002 a0013 a0002 a0013	6	HG03942.hp1 HG03942.hp2 HG04204.hp1 others(3): Show HG03942.hp1 HG03942.hp2 HG04204.hp1 HG04204.hp2 NA18955.hp2 NA18998.hp2	stop_gained	HIGH	c.1408A>T c.1408A>T	p.Lys470* p.Lys470*	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1408/1593	1408/1593	470/530	chr4	9331318
chr4:9331384	T T	A A	12	a0001 a0002 a0003 others(9): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0009 a0010 a0012 a0013 a0014	29	HG01891.hp1 HG01891.hp2 HG02895.hp1 others(26): Show HG01891.hp1 HG01891.hp2 HG02895.hp1 HG02895.hp2 HG03942.hp1 HG03942.hp2 HG04204.hp1 HG04204.hp2 NA18955.hp1 NA18955.hp2 NA18963.hp1 NA18963.hp2 NA18972.hp1 NA18978.hp1 NA18978.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA18989.hp2 NA18998.hp1 NA18998.hp2 NA19055.hp1 NA19055.hp2 NA19062.hp1 NA19062.hp2	missense_variant	MODERATE	c.1474T>A c.1474T>A	p.Ser492Thr p.Ser492Thr	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1474/1593	1474/1593	492/530	chr4	9331384
chr4:9331388	C C	A A	1	a0002 a0002	1	HG03942.hp1 HG03942.hp1	missense_variant	MODERATE	c.1478C>A c.1478C>A	p.Thr493Asn p.Thr493Asn	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1478/1593	1478/1593	493/530	chr4	9331388
chr4:9331418	G G	A A	1	a0009 a0009	1	HG02895.hp2 HG02895.hp2	missense_variant	MODERATE	c.1508G>A c.1508G>A	p.Gly503Asp p.Gly503Asp	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1508/1593	1508/1593	503/530	chr4	9331418
chr4:9331441	A A	G G	1	a0008 a0008	1	NA18972.hp2 NA18972.hp2	missense_variant	MODERATE	c.1531A>G c.1531A>G	p.Arg511Gly p.Arg511Gly	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1531/1593	1531/1593	511/530	chr4	9331441
chr4:9331444	G G	A A	1	a0011 a0011	1	NA18965.hp1 NA18965.hp1	missense_variant	MODERATE	c.1534G>A c.1534G>A	p.Ala512Thr p.Ala512Thr	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1534/1593	1534/1593	512/530	chr4	9331444

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr4:9329985	C C	A A	6	a0003c0003 a0005c0004 a0009c0013 others(3): Show a0003c0003 a0005c0004 a0009c0013 a0010c0012 a0012c0010 a0014c0011	9	HG02895.hp2 NA18955.hp1 NA18972.hp1 others(6): Show HG02895.hp2 NA18955.hp1 NA18972.hp1 NA18978.hp1 NA18985.hp2 NA18989.hp1 NA18989.hp2 NA19055.hp2 NA19062.hp1	synonymous_variant	LOW	c.75C>A c.75C>A	p.Pro25Pro p.Pro25Pro	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	75/1593	75/1593	25/530	chr4	9329985
chr4:9330069	T T	C C	3	a0001c0001 a0001c0015 a0001c0016 a0001c0001 a0001c0015 a0001c0016	6	NA18985.hp1 NA18988.hp1 NA18988.hp2 others(3): Show NA18985.hp1 NA18988.hp1 NA18988.hp2 NA18998.hp1 NA19055.hp1 NA19062.hp2	synonymous_variant	LOW	c.159T>C c.159T>C	p.Asp53Asp p.Asp53Asp	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	159/1593	159/1593	53/530	chr4	9330069
chr4:9330195	G G	A A	3	a0002c0002 a0002c0017 a0013c0018 a0002c0002 a0002c0017 a0013c0018	6	HG03942.hp1 HG03942.hp2 HG04204.hp1 others(3): Show HG03942.hp1 HG03942.hp2 HG04204.hp1 HG04204.hp2 NA18955.hp2 NA18998.hp2	synonymous_variant	LOW	c.285G>A c.285G>A	p.Leu95Leu p.Leu95Leu	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	285/1593	285/1593	95/530	chr4	9330195
chr4:9330216	G G	A A	1	a0011c0022 a0011c0022	1	NA18965.hp1 NA18965.hp1	synonymous_variant	LOW	c.306G>A c.306G>A	p.Pro102Pro p.Pro102Pro	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	306/1593	306/1593	102/530	chr4	9330216
chr4:9330237	G G	C C	1	a0011c0022 a0011c0022	1	NA18965.hp1 NA18965.hp1	synonymous_variant	LOW	c.327G>C c.327G>C	p.Leu109Leu p.Leu109Leu	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	327/1593	327/1593	109/530	chr4	9330237
chr4:9330291	T T	G G	6	a0002c0002 a0002c0017 a0008c0014 others(3): Show a0002c0002 a0002c0017 a0008c0014 a0009c0013 a0013c0018 a0015c0019	9	HG02895.hp2 HG03942.hp1 HG03942.hp2 others(6): Show HG02895.hp2 HG03942.hp1 HG03942.hp2 HG04204.hp1 HG04204.hp2 NA18955.hp2 NA18965.hp2 NA18972.hp2 NA18998.hp2	synonymous_variant	LOW	c.381T>G c.381T>G	p.Thr127Thr p.Thr127Thr	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	381/1593	381/1593	127/530	chr4	9330291
chr4:9330354	A A	T T	4	a0005c0004 a0010c0012 a0012c0010 others(1): Show a0005c0004 a0010c0012 a0012c0010 a0014c0011	5	NA18978.hp1 NA18985.hp2 NA18989.hp1 others(2): Show NA18978.hp1 NA18985.hp2 NA18989.hp1 NA18989.hp2 NA19055.hp2	synonymous_variant	LOW	c.444A>T c.444A>T	p.Ala148Ala p.Ala148Ala	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	444/1593	444/1593	148/530	chr4	9330354
chr4:9330459	A A	G G	11	a0002c0002 a0002c0017 a0004c0008 others(8): Show a0002c0002 a0002c0017 a0004c0008 a0004c0009 a0005c0004 a0006c0007 a0007c0006 a0009c0013 a0010c0012 a0012c0010 a0013c0018	15	HG01891.hp1 HG01891.hp2 HG02895.hp1 others(12): Show HG01891.hp1 HG01891.hp2 HG02895.hp1 HG02895.hp2 HG03942.hp1 HG03942.hp2 HG04204.hp1 HG04204.hp2 NA18955.hp2 NA18978.hp1 NA18985.hp2 NA18986.hp2 NA18989.hp1 NA18998.hp2 NA19055.hp2	synonymous_variant	LOW	c.549A>G c.549A>G	p.Val183Val p.Val183Val	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	549/1593	549/1593	183/530	chr4	9330459
chr4:9330633	G G	A A	1	a0011c0022 a0011c0022	1	NA18965.hp1 NA18965.hp1	synonymous_variant	LOW	c.723G>A c.723G>A	p.Val241Val p.Val241Val	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	723/1593	723/1593	241/530	chr4	9330633
chr4:9330723	C C	T T	3	a0005c0004 a0010c0012 a0012c0010 a0005c0004 a0010c0012 a0012c0010	4	NA18978.hp1 NA18985.hp2 NA18989.hp1 others(1): Show NA18978.hp1 NA18985.hp2 NA18989.hp1 NA19055.hp2	synonymous_variant	LOW	c.813C>T c.813C>T	p.Thr271Thr p.Thr271Thr	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	813/1593	813/1593	271/530	chr4	9330723
chr4:9330768	C C	G G	1	a0015c0019 a0015c0019	1	NA18965.hp2 NA18965.hp2	synonymous_variant	LOW	c.858C>G c.858C>G	p.Val286Val p.Val286Val	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	858/1593	858/1593	286/530	chr4	9330768
chr4:9330771	A A	C C	1	a0009c0013 a0009c0013	1	HG02895.hp2 HG02895.hp2	synonymous_variant	LOW	c.861A>C c.861A>C	p.Thr287Thr p.Thr287Thr	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	861/1593	861/1593	287/530	chr4	9330771
chr4:9330855	C C	T T	13	a0001c0001 a0001c0005 a0003c0003 others(10): Show a0001c0001 a0001c0005 a0003c0003 a0004c0008 a0004c0009 a0005c0004 a0006c0007 a0007c0006 a0008c0014 a0010c0012 a0011c0022 a0012c0010 a0015c0019	20	HG01891.hp1 HG01891.hp2 HG02895.hp1 others(17): Show HG01891.hp1 HG01891.hp2 HG02895.hp1 NA18955.hp1 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18965.hp2 NA18972.hp1 NA18972.hp2 NA18978.hp1 NA18985.hp1 NA18985.hp2 NA18986.hp2 NA18989.hp1 NA18998.hp1 NA19055.hp1 NA19055.hp2 NA19062.hp1 NA19062.hp2	synonymous_variant	LOW	c.945C>T c.945C>T	p.Leu315Leu p.Leu315Leu	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	945/1593	945/1593	315/530	chr4	9330855
chr4:9330945	G G	A A	1	a0015c0019 a0015c0019	1	NA18965.hp2 NA18965.hp2	synonymous_variant	LOW	c.1035G>A c.1035G>A	p.Gln345Gln p.Gln345Gln	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1035/1593	1035/1593	345/530	chr4	9330945
chr4:9330997	C C	T T	3	a0002c0002 a0002c0017 a0013c0018 a0002c0002 a0002c0017 a0013c0018	6	HG03942.hp1 HG03942.hp2 HG04204.hp1 others(3): Show HG03942.hp1 HG03942.hp2 HG04204.hp1 HG04204.hp2 NA18955.hp2 NA18998.hp2	synonymous_variant	LOW	c.1087C>T c.1087C>T	p.Leu363Leu p.Leu363Leu	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1087/1593	1087/1593	363/530	chr4	9330997
chr4:9331053	C C	T T	1	a0008c0014 a0008c0014	1	NA18972.hp2 NA18972.hp2	synonymous_variant	LOW	c.1143C>T c.1143C>T	p.His381His p.His381His	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1143/1593	1143/1593	381/530	chr4	9331053
chr4:9331075	A A	C C	1	a0004c0009 a0004c0009	1	HG01891.hp2 HG01891.hp2	synonymous_variant	LOW	c.1165A>C c.1165A>C	p.Arg389Arg p.Arg389Arg	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1165/1593	1165/1593	389/530	chr4	9331075
chr4:9331107	C C	A A	22	a0001c0001 a0001c0005 a0001c0015 others(19): Show a0001c0001 a0001c0005 a0001c0015 a0001c0016 a0001c0020 a0001c0021 a0002c0002 a0002c0017 a0003c0003 a0004c0008 a0004c0009 a0005c0004 a0006c0007 a0007c0006 a0008c0014 a0009c0013 a0010c0012 a0011c0022 a0012c0010 a0013c0018 a0014c0011 a0015c0019	32	HG01891.hp1 HG01891.hp2 HG02895.hp1 others(29): Show HG01891.hp1 HG01891.hp2 HG02895.hp1 HG02895.hp2 HG03942.hp1 HG03942.hp2 HG04204.hp1 HG04204.hp2 NA18955.hp1 NA18955.hp2 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18965.hp2 NA18972.hp1 NA18972.hp2 NA18978.hp1 NA18978.hp2 NA18985.hp1 NA18985.hp2 NA18986.hp1 NA18986.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA18989.hp2 NA18998.hp1 NA18998.hp2 NA19055.hp1 NA19055.hp2 NA19062.hp1 NA19062.hp2	synonymous_variant	LOW	c.1197C>A c.1197C>A	p.Thr399Thr p.Thr399Thr	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1197/1593	1197/1593	399/530	chr4	9331107
chr4:9331293	C C	A A	1	a0014c0011 a0014c0011	1	NA18989.hp2 NA18989.hp2	synonymous_variant	LOW	c.1383C>A c.1383C>A	p.Pro461Pro p.Pro461Pro	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1383/1593	1383/1593	461/530	chr4	9331293
chr4:9331389	C C	A A	3	a0001c0015 a0001c0020 a0014c0011 a0001c0015 a0001c0020 a0014c0011	3	NA18986.hp1 NA18988.hp1 NA18989.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp2	synonymous_variant	LOW	c.1479C>A c.1479C>A	p.Thr493Thr p.Thr493Thr	USP17L25	ENSG00000230430.5	transcript	ENST00000509271.1	protein_coding	1/1	1479/1593	1479/1593	493/530	chr4	9331389

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

Search by Genic region

Search

🧬 JoGo Online Haplotype Explorer USP17L25_chr4_9324911_9336503

JoGo Local Haplotype Explorer (on iGV) USP17L25_chr4_9324911_9336503

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 15)

CCoding Level Haplotype Info (Total: 22)

TTranscript Level Haplotype Info (Total: 0)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 22)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 22)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 22)

Haplotype Details by Sample (Haploid Level) (Total: 32)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 30)

CCoding Level Variants (Synonymous Mutations) (Total: 20)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 0)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

External Link

Annotation (Repeats)

Annotation (SNP Array)