Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	6759
ensemblid	ENSG00000268009.6
hgncid	11338
symbol	SSX4
name	SSX family member 4
refseq_nuc	NM_005636.4
refseq_prot	NP_005627.1
ensembl_nuc	ENST00000595689.3
ensembl_prot	ENSP00000469011.1
mane_status	MANE Select
chr	chrX
start	48383539
end	48393347
strand	+
ver	v1.2
region	chrX:48383539-48393347
region5000	chrX:48378539-48398347
regionname0	SSX4_chrX_48383539_48393347
regionname5000	SSX4_chrX_48378539_48398347

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	188	93	31	16	28	3	15	15	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0002	0/0	188	8	1	1	5	1	0	5	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0003	0/0	49	1	0	0	1	0	0	1	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0004	0/0	122	1	0	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0005	0/0	39	1	0	0	1	0	0	1	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	567	93	31	16	28	3	15	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
c0002	0/0	567	8	1	1	5	1	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
c0003	0/0	567	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
c0004	0/0	568	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
c0005	0/0	567	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	643	54	11	10	23	1	9	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
t0002	0/0	643	40	15	7	10	3	5	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
t0003	0/0	643	4	4	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
t0004	0/0	643	2	0	0	2	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
t0005	0/0	643	2	2	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
t0006	0/0	643	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
t0007	0/0	643	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	9	3	2	4	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0002	0/0	7	0	2	3	0	2	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0003	0/0	7	0	1	3	1	2	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0004	0/0	6	2	1	2	1	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0005	0/0	5	1	0	3	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0006	0/0	5	0	1	3	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0007	0/0	4	0	0	1	0	3	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0008	0/0	3	1	1	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0009	0/0	3	1	1	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0010	0/0	2	1	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0011	0/0	2	0	0	0	1	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0012	0/0	2	2	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0013	0/0	2	1	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0014	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0015	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0016	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0017	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0018	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0019	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0020	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0021	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0022	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0023	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0024	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0025	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0026	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0027	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0028	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0029	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0030	0/0	1	0	0	0	1	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0031	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0032	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0033	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0034	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0035	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0036	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0037	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0038	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0039	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0040	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0041	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0042	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0043	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0044	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0045	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0046	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0047	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0048	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0049	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0050	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0051	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0052	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0053	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0054	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0055	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0056	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0057	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0058	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0059	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
g0060	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	567	93	31	16	28	3	15	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0002c0002	0/0	567	8	1	1	5	1	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0003c0004	0/0	568	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0004c0005	0/0	567	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0005c0003	0/0	567	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1209	53	11	10	22	1	9	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0001c0001t0002	0/0	1209	31	14	6	4	2	5	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0001c0001t0003	0/0	1209	4	4	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0001c0001t0004	0/0	1209	2	0	0	2	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0001c0001t0005	0/0	1209	2	2	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0001c0001t0006	0/0	1209	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0002c0002t0002	0/0	1209	8	1	1	5	1	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0003c0004t0002	0/0	1210	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0004c0005t0007	0/0	1209	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347
a0005c0003t0001	0/0	1209	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	copy fasta	chrX	48378539	48398347

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	9	3	2	4	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0003	0/0	7	0	1	3	1	2	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0005	0/0	5	1	0	3	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0006	0/0	5	0	1	3	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0007	0/0	4	0	0	1	0	3	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0009	0/0	3	1	1	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0013	0/0	2	1	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0040	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0041	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0042	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0043	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0044	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0045	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0046	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0050	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0051	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0052	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0053	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0054	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0055	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0056	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0057	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0058	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0059	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0001g0060	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0002	0/0	3	0	1	0	0	2	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0004	0/0	5	2	1	1	1	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0008	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0010	0/0	2	1	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0011	0/0	2	0	0	0	1	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0012	0/0	2	2	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0018	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0019	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0020	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0022	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0023	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0024	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0025	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0026	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0027	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0029	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0032	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0034	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0035	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0036	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0037	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0002g0039	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0003g0021	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0003g0033	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0003g0048	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0003g0049	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0004g0004	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0004g0017	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0005g0015	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0005g0016	0/0	1	1	0	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0001c0001t0006g0031	0/0	1	0	0	0	0	1	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0002c0002t0002g0002	0/0	4	0	1	3	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0002c0002t0002g0008	0/0	2	1	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0002c0002t0002g0028	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0002c0002t0002g0030	0/0	1	0	0	0	1	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0003c0004t0002g0014	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0004c0005t0007g0038	0/0	1	0	1	0	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
a0005c0003t0001g0047	0/0	1	0	0	1	0	0	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0002	g0011	EUR	GBR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG00621	hp1	a0001	c0001	t0001	g0006	EAS	CHS	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG00642	hp1	a0001	c0001	t0001	g0055	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG00673	hp1	a0001	c0001	t0001	g0003	EAS	CHS	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG00735	hp1	a0001	c0001	t0002	g0035	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG00735	hp2	a0001	c0001	t0001	g0053	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01074	hp1	a0001	c0001	t0002	g0002	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01081	hp1	a0001	c0001	t0002	g0004	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01081	hp2	a0001	c0001	t0001	g0006	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01109	hp1	a0001	c0001	t0001	g0057	AMR	PUR	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01256	hp1	a0001	c0001	t0001	g0056	AMR	CLM	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01358	hp1	a0001	c0001	t0002	g0020	AMR	CLM	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01433	hp1	a0001	c0001	t0002	g0008	AMR	CLM	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01516	hp1	a0002	c0002	t0002	g0030	EUR	IBS	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01516	hp2	a0001	c0001	t0001	g0003	EUR	IBS	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01884	hp1	a0001	c0001	t0001	g0040	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01884	hp2	a0001	c0001	t0002	g0025	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01943	hp1	a0001	c0001	t0002	g0032	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01952	hp1	a0001	c0001	t0001	g0003	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01978	hp1	a0001	c0001	t0001	g0054	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01978	hp2	a0004	c0005	t0007	g0038	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01981	hp1	a0002	c0002	t0002	g0002	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG01981	hp2	a0001	c0001	t0001	g0009	AMR	PEL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02027	hp1	a0001	c0001	t0002	g0018	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02040	hp1	a0001	c0001	t0001	g0005	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02074	hp1	a0001	c0001	t0002	g0029	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02080	hp1	a0001	c0001	t0001	g0005	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02080	hp2	a0001	c0001	t0002	g0019	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02083	hp1	a0001	c0001	t0001	g0009	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02129	hp1	a0001	c0001	t0001	g0007	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02132	hp1	a0001	c0001	t0001	g0041	EAS	KHV	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02145	hp1	a0001	c0001	t0001	g0009	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02165	hp1	a0001	c0001	t0001	g0001	EAS	CDX	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02165	hp2	a0001	c0001	t0001	g0001	EAS	CDX	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02451	hp1	a0001	c0001	t0002	g0026	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02451	hp2	a0001	c0001	t0003	g0049	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02615	hp1	a0001	c0001	t0001	g0044	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02615	hp2	a0001	c0001	t0001	g0013	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02630	hp1	a0001	c0001	t0001	g0043	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02630	hp2	a0001	c0001	t0002	g0036	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02683	hp1	a0001	c0001	t0001	g0007	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02683	hp2	a0001	c0001	t0001	g0003	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02698	hp1	a0001	c0001	t0002	g0002	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02717	hp1	a0001	c0001	t0002	g0010	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02735	hp1	a0001	c0001	t0001	g0005	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02809	hp1	a0001	c0001	t0002	g0027	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02809	hp2	a0001	c0001	t0001	g0045	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02897	hp1	a0001	c0001	t0002	g0034	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02897	hp2	a0001	c0001	t0002	g0004	AFR	GWD	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02922	hp1	a0001	c0001	t0001	g0001	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02922	hp2	a0001	c0001	t0002	g0004	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03017	hp1	a0001	c0001	t0006	g0031	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03130	hp1	a0001	c0001	t0001	g0060	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03209	hp2	a0001	c0001	t0003	g0048	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03225	hp1	a0001	c0001	t0001	g0005	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03239	hp1	a0001	c0001	t0002	g0039	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03239	hp2	a0001	c0001	t0002	g0011	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03453	hp1	a0001	c0001	t0003	g0021	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03453	hp2	a0001	c0001	t0002	g0023	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03492	hp1	a0001	c0001	t0001	g0007	SAS	PJL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03516	hp1	a0001	c0001	t0002	g0024	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03516	hp2	a0001	c0001	t0002	g0022	AFR	ESN	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03579	hp1	a0001	c0001	t0003	g0033	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03688	hp1	a0001	c0001	t0001	g0052	SAS	STU	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03942	hp1	a0001	c0001	t0001	g0003	SAS	BEB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG04115	hp1	a0001	c0001	t0001	g0051	SAS	STU	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG04199	hp1	a0001	c0001	t0002	g0010	SAS	STU	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG04204	hp1	a0001	c0001	t0002	g0002	SAS	STU	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG04228	hp1	a0001	c0001	t0001	g0007	SAS	STU	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18747	hp1	a0001	c0001	t0002	g0004	EAS	CHB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18906	hp1	a0001	c0001	t0002	g0012	AFR	YRI	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18906	hp2	a0001	c0001	t0005	g0015	AFR	YRI	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18943	hp1	a0001	c0001	t0001	g0046	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18944	hp1	a0003	c0004	t0002	g0014	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18945	hp1	a0001	c0001	t0001	g0059	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18953	hp1	a0001	c0001	t0001	g0058	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18962	hp1	a0001	c0001	t0004	g0017	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18966	hp1	a0001	c0001	t0001	g0013	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18970	hp1	a0001	c0001	t0001	g0006	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18977	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18982	hp1	a0002	c0002	t0002	g0002	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18983	hp1	a0005	c0003	t0001	g0047	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18986	hp1	a0001	c0001	t0004	g0004	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18994	hp1	a0002	c0002	t0002	g0028	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18999	hp1	a0001	c0001	t0001	g0050	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18999	hp2	a0002	c0002	t0002	g0008	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19004	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19043	hp2	a0001	c0001	t0005	g0016	AFR	LWK	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19056	hp1	a0001	c0001	t0001	g0042	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19062	hp1	a0002	c0002	t0002	g0002	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19066	hp1	a0002	c0002	t0002	g0002	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19079	hp1	a0001	c0001	t0001	g0006	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19088	hp1	a0001	c0001	t0001	g0005	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA19091	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA20805	hp1	a0001	c0001	t0002	g0004	EUR	TSI	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA20905	hp1	a0001	c0001	t0001	g0006	SAS	GIH	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG02486	hp2	a0001	c0001	t0001	g0001	AFR	ACB	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
HG03471	hp1	a0001	c0001	t0002	g0037	AFR	MSL	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA20300	hp1	a0002	c0002	t0002	g0008	AFR	USA	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347
NA20300	hp2	a0001	c0001	t0002	g0012	AFR	USA	SSX4_chrX_48378539_48398347	SSX4	chrX	48378539	48398347

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:48384071	CT CT	C C	1	a0005 a0005	1	NA18983.hp1 NA18983.hp1	frameshift_variant	HIGH	c.21delT c.21delT	p.Phe7fs p.Phe7fs	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	2/8	67/1209	21/567	7/188	INFO_REALIGN_3_PRIME	chrX	48384071
chrX:48384559	A A	AG AG	1	a0001 a0001	1	HG04115.hp1 HG04115.hp1	frameshift_variant&splice_region_variant	HIGH	c.70dupG c.70dupG	p.Ala24fs p.Ala24fs	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/8	117/1209	71/567	24/188	INFO_REALIGN_3_PRIME	chrX	48384559
chrX:48384639	T T	TA TA	1	a0003 a0003	1	NA18944.hp1 NA18944.hp1	frameshift_variant&stop_gained	HIGH	c.149dupA c.149dupA	p.Tyr50fs p.Tyr50fs	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/8	196/1209	150/567	50/188	INFO_REALIGN_3_PRIME	chrX	48384639
chrX:48384647	G G	GC GC	1	a0005 a0005	1	NA18983.hp1 NA18983.hp1	frameshift_variant	HIGH	c.157dupC c.157dupC	p.Leu53fs p.Leu53fs	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/8	204/1209	158/567	53/188	INFO_REALIGN_3_PRIME	chrX	48384647
chrX:48385382	G G	A A	1	a0002 a0002	8	HG01516.hp1 HG01981.hp1 NA18982.hp1 others(5): Show HG01516.hp1 HG01981.hp1 NA18982.hp1 NA18994.hp1 NA18999.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1	missense_variant	MODERATE	c.215G>A c.215G>A	p.Arg72His p.Arg72His	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/8	261/1209	215/567	72/188		chrX	48385382
chrX:48389351	GC GC	G G	1	a0004 a0004	1	HG01978.hp2 HG01978.hp2	frameshift_variant	HIGH	c.339delC c.339delC	p.Lys114fs p.Lys114fs	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/8	385/1209	339/567	113/188	INFO_REALIGN_3_PRIME	chrX	48389351
chrX:48389391	G G	GT GT	1	a0004 a0004	1	HG01978.hp2 HG01978.hp2	frameshift_variant	HIGH	c.377dupT c.377dupT	p.Pro127fs p.Pro127fs	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/8	424/1209	378/567	126/188	INFO_REALIGN_3_PRIME	chrX	48389391
chrX:48393342	TC TC	T T	1	a0004 a0004	1	HG01978.hp2 HG01978.hp2	splice_region_variant	LOW	c.595delC c.595delC		SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8				INFO_REALIGN_3_PRIME	chrX	48393342

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:48392769	A A	AC AC	1	a0004c0005t0007 a0004c0005t0007	1	HG01978.hp2 HG01978.hp2	3_prime_UTR_variant	MODIFIER	c.19dupC c.19dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	802	INFO_REALIGN_3_PRIME	chrX	48392769
chrX:48392799	G G	C C	1	a0001c0001t0003 a0001c0001t0003	4	HG02451.hp2 HG03209.hp2 HG03453.hp1 others(1): Show HG02451.hp2 HG03209.hp2 HG03453.hp1 HG03579.hp1	3_prime_UTR_variant	MODIFIER	c.48G>C c.48G>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	830		chrX	48392799
chrX:48392886	G G	GT GT	1	a0001c0001t0006 a0001c0001t0006	1	HG03017.hp1 HG03017.hp1	3_prime_UTR_variant	MODIFIER	c.137dupT c.137dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	920	INFO_REALIGN_3_PRIME	chrX	48392886
chrX:48392893	G G	A A	1	a0001c0001t0004 a0001c0001t0004	2	NA18962.hp1 NA18986.hp1 NA18962.hp1 NA18986.hp1	3_prime_UTR_variant	MODIFIER	c.142G>A c.142G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	924		chrX	48392893
chrX:48392953	T T	TG TG	1	a0004c0005t0007 a0004c0005t0007	1	HG01978.hp2 HG01978.hp2	3_prime_UTR_variant	MODIFIER	c.203dupG c.203dupG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	986	INFO_REALIGN_3_PRIME	chrX	48392953
chrX:48392964	GT GT	G G	1	a0004c0005t0007 a0004c0005t0007	1	HG01978.hp2 HG01978.hp2	3_prime_UTR_variant	MODIFIER	c.215delT c.215delT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	997	INFO_REALIGN_3_PRIME	chrX	48392964
chrX:48393226	T T	C C	1	a0001c0001t0005 a0001c0001t0005	2	NA18906.hp2 NA19043.hp2 NA18906.hp2 NA19043.hp2	3_prime_UTR_variant	MODIFIER	c.475T>C c.475T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	1257		chrX	48393226
chrX:48393226	TC TC	T T	1	a0001c0001t0006 a0001c0001t0006	1	HG03017.hp1 HG03017.hp1	3_prime_UTR_variant	MODIFIER	c.477delC c.477delC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	1259	INFO_REALIGN_3_PRIME	chrX	48393226
chrX:48393240	A A	T T	7	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(4): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0002c0002t0002 a0003c0004t0002	49	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(46): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01884.hp2 HG01943.hp1 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02080.hp2 HG02451.hp1 HG02451.hp2 HG02630.hp2 HG02698.hp1 HG02717.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18962.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19043.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	3_prime_UTR_variant	MODIFIER	c.489A>T c.489A>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	8/8	1271		chrX	48393240

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:48383574	C C	T T	12	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0051 others(9): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060	22	HG00621.hp1 HG00642.hp1 HG00673.hp1 others(19): Show HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp2 HG01109.hp1 HG01256.hp1 HG01516.hp2 HG01952.hp1 HG01978.hp1 HG02683.hp2 HG03130.hp1 HG03688.hp1 HG03942.hp1 HG04115.hp1 NA18945.hp1 NA18953.hp1 NA18970.hp1 NA18977.hp1 NA19004.hp1 NA19079.hp1 NA20905.hp1	intron_variant	MODIFIER	c.-21+10C>T c.-21+10C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7		chrX	48383574
chrX:48383595	CT CT	C C	1	a0003c0004t0002g0014 a0003c0004t0002g0014	1	NA18944.hp1 NA18944.hp1	intron_variant	MODIFIER	c.-21+33delT c.-21+33delT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383595
chrX:48383606	T T	TC TC	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.-21+46dupC c.-21+46dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383606
chrX:48383606	TC TC	T T	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	NA18999.hp1 NA18999.hp1	intron_variant	MODIFIER	c.-21+46delC c.-21+46delC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383606
chrX:48383613	C C	T T	1	a0001c0001t0001g0060 a0001c0001t0001g0060	1	HG03130.hp1 HG03130.hp1	intron_variant	MODIFIER	c.-21+49C>T c.-21+49C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7		chrX	48383613
chrX:48383898	C C	CA CA	7	a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0040 others(4): Show a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0040 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0002g0039 a0004c0005t0007g0038	12	HG00735.hp2 HG01884.hp1 HG01978.hp2 others(9): Show HG00735.hp2 HG01884.hp1 HG01978.hp2 HG01981.hp2 HG02083.hp1 HG02129.hp1 HG02145.hp1 HG02683.hp1 HG03239.hp1 HG03492.hp1 HG03688.hp1 HG04228.hp1	intron_variant	MODIFIER	c.-20-115dupA c.-20-115dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383898
chrX:48383898	C C	CAA CAA	17	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0011 others(14): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0029 a0001c0001t0002g0032 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0003g0033 a0001c0001t0004g0004 a0001c0001t0006g0031 a0002c0002t0002g0002 a0002c0002t0002g0028 a0002c0002t0002g0030 a0003c0004t0002g0014	28	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(25): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01516.hp1 HG01943.hp1 HG01981.hp1 HG02074.hp1 HG02630.hp2 HG02698.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03239.hp2 HG03471.hp1 HG03579.hp1 HG04204.hp1 NA18747.hp1 NA18906.hp1 NA18944.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA19062.hp1 NA19066.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-20-116_-20-115dup others(2): Show c.-20-116_-20-115dupAA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383898
chrX:48383898	C C	CAAA CAAA	14	a0001c0001t0002g0008 a0001c0001t0002g0010 a0001c0001t0002g0018 others(11): Show a0001c0001t0002g0008 a0001c0001t0002g0010 a0001c0001t0002g0018 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0003g0021 a0001c0001t0004g0017 a0002c0002t0002g0008	16	HG01358.hp1 HG01433.hp1 HG01884.hp2 others(13): Show HG01358.hp1 HG01433.hp1 HG01884.hp2 HG02027.hp1 HG02080.hp2 HG02451.hp1 HG02717.hp1 HG02809.hp1 HG03453.hp1 HG03453.hp2 HG03516.hp1 HG03516.hp2 HG04199.hp1 NA18962.hp1 NA18999.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-20-117_-20-115dup others(3): Show c.-20-117_-20-115dupAAA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383898
chrX:48383898	C C	CAAAA CAAAA	1	a0001c0001t0005g0016 a0001c0001t0005g0016	1	NA19043.hp2 NA19043.hp2	intron_variant	MODIFIER	c.-20-118_-20-115dup others(4): Show c.-20-118_-20-115dupAAAA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383898
chrX:48383898	C C	CAAAAA CAAAAA	1	a0001c0001t0005g0015 a0001c0001t0005g0015	1	NA18906.hp2 NA18906.hp2	intron_variant	MODIFIER	c.-20-119_-20-115dup others(5): Show c.-20-119_-20-115dupAAAAA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383898
chrX:48383898	CA CA	C C	2	a0001c0001t0001g0059 a0005c0003t0001g0047 a0001c0001t0001g0059 a0005c0003t0001g0047	2	NA18945.hp1 NA18983.hp1 NA18945.hp1 NA18983.hp1	intron_variant	MODIFIER	c.-20-115delA c.-20-115delA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383898
chrX:48383910	A A	AAC AAC	2	a0001c0001t0003g0048 a0001c0001t0003g0049 a0001c0001t0003g0048 a0001c0001t0003g0049	2	HG02451.hp2 HG03209.hp2 HG02451.hp2 HG03209.hp2	intron_variant	MODIFIER	c.-20-123_-20-122ins others(2): Show c.-20-123_-20-122insCA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7	INFO_REALIGN_3_PRIME	chrX	48383910
chrX:48383935	G G	A A	10	a0001c0001t0002g0002 a0001c0001t0002g0008 a0001c0001t0002g0018 others(7): Show a0001c0001t0002g0002 a0001c0001t0002g0008 a0001c0001t0002g0018 a0001c0001t0002g0029 a0001c0001t0004g0017 a0001c0001t0006g0031 a0002c0002t0002g0002 a0002c0002t0002g0008 a0002c0002t0002g0028 a0002c0002t0002g0030	16	HG01074.hp1 HG01433.hp1 HG01516.hp1 others(13): Show HG01074.hp1 HG01433.hp1 HG01516.hp1 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02698.hp1 HG03017.hp1 HG04204.hp1 NA18962.hp1 NA18982.hp1 NA18994.hp1 NA18999.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-20-99G>A c.-20-99G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7		chrX	48383935
chrX:48383979	G G	A A	1	a0002c0002t0002g0028 a0002c0002t0002g0028	1	NA18994.hp1 NA18994.hp1	intron_variant	MODIFIER	c.-20-55G>A c.-20-55G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7		chrX	48383979
chrX:48384019	C C	T T	1	a0001c0001t0002g0027 a0001c0001t0002g0027	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.-20-15C>T c.-20-15C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	1/7		chrX	48384019
chrX:48384157	A A	AG AG	1	a0001c0001t0001g0040 a0001c0001t0001g0040	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.69+39dupG c.69+39dupG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	2/7	INFO_REALIGN_3_PRIME	chrX	48384157
chrX:48384190	A A	AG AG	2	a0001c0001t0001g0040 a0001c0001t0001g0051 a0001c0001t0001g0040 a0001c0001t0001g0051	2	HG01884.hp1 HG04115.hp1 HG01884.hp1 HG04115.hp1	intron_variant	MODIFIER	c.69+72dupG c.69+72dupG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	2/7	INFO_REALIGN_3_PRIME	chrX	48384190
chrX:48384285	T T	TC TC	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.69+166dupC c.69+166dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	2/7	INFO_REALIGN_3_PRIME	chrX	48384285
chrX:48384327	T T	TC TC	1	a0005c0003t0001g0047 a0005c0003t0001g0047	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.69+208dupC c.69+208dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	2/7	INFO_REALIGN_3_PRIME	chrX	48384327
chrX:48384542	C C	CT CT	7	a0001c0001t0001g0051 a0001c0001t0001g0058 a0001c0001t0002g0012 others(4): Show a0001c0001t0001g0051 a0001c0001t0001g0058 a0001c0001t0002g0012 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0036 a0001c0001t0002g0037	8	HG01884.hp2 HG02451.hp1 HG02630.hp2 others(5): Show HG01884.hp2 HG02451.hp1 HG02630.hp2 HG03471.hp1 HG04115.hp1 NA18906.hp1 NA18953.hp1 NA20300.hp2	splice_region_variant&intron_variant	LOW	c.70-5dupT c.70-5dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	2/7	INFO_REALIGN_3_PRIME	chrX	48384542
chrX:48384542	CT CT	C C	1	a0001c0001t0003g0048 a0001c0001t0003g0048	1	HG03209.hp2 HG03209.hp2	splice_region_variant&intron_variant	LOW	c.70-5delT c.70-5delT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	2/7	INFO_REALIGN_3_PRIME	chrX	48384542
chrX:48384706	T T	TG TG	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.184+35dupG c.184+35dupG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48384706
chrX:48384722	TC TC	T T	1	a0005c0003t0001g0047 a0005c0003t0001g0047	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.184+50delC c.184+50delC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48384722
chrX:48384752	C C	T T	2	a0001c0001t0005g0015 a0001c0001t0005g0016 a0001c0001t0005g0015 a0001c0001t0005g0016	2	NA18906.hp2 NA19043.hp2 NA18906.hp2 NA19043.hp2	intron_variant	MODIFIER	c.184+77C>T c.184+77C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7		chrX	48384752
chrX:48384770	AT AT	A A	1	a0005c0003t0001g0047 a0005c0003t0001g0047	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.184+99delT c.184+99delT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48384770
chrX:48384849	AG AG	A A	1	a0003c0004t0002g0014 a0003c0004t0002g0014	1	NA18944.hp1 NA18944.hp1	intron_variant	MODIFIER	c.184+177delG c.184+177delG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48384849
chrX:48384925	A A	G G	1	a0001c0001t0006g0031 a0001c0001t0006g0031	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.184+250A>G c.184+250A>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7		chrX	48384925
chrX:48384947	A A	AC AC	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.184+277dupC c.184+277dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48384947
chrX:48384968	A A	AC AC	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.184+296dupC c.184+296dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48384968
chrX:48384992	G G	GTC GTC	1	a0001c0001t0002g0029 a0001c0001t0002g0029	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.184+337_184+338dup others(2): Show c.184+337_184+338dupCT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48384992
chrX:48384992	GTCTC GTCTC	G G	5	a0001c0001t0002g0012 a0001c0001t0002g0025 a0001c0001t0002g0026 others(2): Show a0001c0001t0002g0012 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0036 a0001c0001t0002g0037	6	HG01884.hp2 HG02451.hp1 HG02630.hp2 others(3): Show HG01884.hp2 HG02451.hp1 HG02630.hp2 HG03471.hp1 NA18906.hp1 NA20300.hp2	intron_variant	MODIFIER	c.184+335_184+338del others(4): Show c.184+335_184+338delCTCT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48384992
chrX:48384992	GTCTCTC GTCTCTC	G G	1	a0001c0001t0002g0024 a0001c0001t0002g0024	1	HG03516.hp1 HG03516.hp1	intron_variant	MODIFIER	c.184+333_184+338del others(6): Show c.184+333_184+338delCTCTCT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48384992
chrX:48385012	C C	CT CT	1	a0001c0001t0002g0023 a0001c0001t0002g0023	1	HG03453.hp2 HG03453.hp2	intron_variant	MODIFIER	c.185-327dupT c.185-327dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48385012
chrX:48385012	CT CT	C C	5	a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 others(2): Show a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0005g0015 a0001c0001t0005g0016	5	HG01884.hp1 HG02132.hp1 NA18906.hp2 others(2): Show HG01884.hp1 HG02132.hp1 NA18906.hp2 NA19043.hp2 NA19056.hp1	intron_variant	MODIFIER	c.185-327delT c.185-327delT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48385012
chrX:48385245	A A	G G	2	a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0045 a0001c0001t0001g0046	2	HG02809.hp2 NA18943.hp1 HG02809.hp2 NA18943.hp1	intron_variant	MODIFIER	c.185-107A>G c.185-107A>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7		chrX	48385245
chrX:48385297	A A	AC AC	1	a0001c0001t0001g0058 a0001c0001t0001g0058	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.185-53dupC c.185-53dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48385297
chrX:48385307	G G	GC GC	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.185-42dupC c.185-42dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48385307
chrX:48385313	G G	GC GC	1	a0001c0001t0001g0058 a0001c0001t0001g0058	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.185-38dupC c.185-38dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	3/7	INFO_REALIGN_3_PRIME	chrX	48385313
chrX:48385531	AT AT	A A	1	a0001c0001t0001g0058 a0001c0001t0001g0058	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.280+87delT c.280+87delT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48385531
chrX:48385562	G G	GA GA	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.280+126dupA c.280+126dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48385562
chrX:48385562	GA GA	G G	36	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0008 others(33): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0008 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0018 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0032 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0039 a0001c0001t0003g0021 a0001c0001t0003g0033 a0001c0001t0003g0048 a0001c0001t0003g0049 a0001c0001t0004g0004 a0001c0001t0004g0017 a0001c0001t0005g0015 a0001c0001t0005g0016 a0001c0001t0006g0031 a0002c0002t0002g0002 a0002c0002t0002g0008 a0002c0002t0002g0028 a0002c0002t0002g0030 a0003c0004t0002g0014	49	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(46): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01884.hp2 HG01943.hp1 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02080.hp2 HG02451.hp1 HG02451.hp2 HG02630.hp2 HG02698.hp1 HG02717.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18962.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19043.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.280+126delA c.280+126delA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48385562
chrX:48385694	T T	TA TA	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.280+251dupA c.280+251dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48385694
chrX:48385729	T T	C C	1	a0001c0001t0005g0016 a0001c0001t0005g0016	1	NA19043.hp2 NA19043.hp2	intron_variant	MODIFIER	c.280+282T>C c.280+282T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7		chrX	48385729
chrX:48385808	G G	GT GT	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.280+367dupT c.280+367dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48385808
chrX:48385824	A A	AT AT	2	a0001c0001t0001g0053 a0001c0001t0001g0057 a0001c0001t0001g0053 a0001c0001t0001g0057	2	HG00735.hp2 HG01109.hp1 HG00735.hp2 HG01109.hp1	intron_variant	MODIFIER	c.280+386dupT c.280+386dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48385824
chrX:48385920	G G	A A	1	a0001c0001t0001g0054 a0001c0001t0001g0054	1	HG01978.hp1 HG01978.hp1	intron_variant	MODIFIER	c.280+473G>A c.280+473G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7		chrX	48385920
chrX:48385925	T T	TC TC	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.280+480dupC c.280+480dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48385925
chrX:48386132	C C	T T	5	a0001c0001t0002g0012 a0001c0001t0002g0025 a0001c0001t0002g0026 others(2): Show a0001c0001t0002g0012 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0036 a0001c0001t0002g0037	6	HG01884.hp2 HG02451.hp1 HG02630.hp2 others(3): Show HG01884.hp2 HG02451.hp1 HG02630.hp2 HG03471.hp1 NA18906.hp1 NA20300.hp2	intron_variant	MODIFIER	c.280+685C>T c.280+685C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7		chrX	48386132
chrX:48386321	T T	TA TA	36	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0008 others(33): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0008 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0018 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0032 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0039 a0001c0001t0003g0021 a0001c0001t0003g0033 a0001c0001t0003g0048 a0001c0001t0003g0049 a0001c0001t0004g0004 a0001c0001t0004g0017 a0001c0001t0005g0015 a0001c0001t0005g0016 a0001c0001t0006g0031 a0002c0002t0002g0002 a0002c0002t0002g0008 a0002c0002t0002g0028 a0002c0002t0002g0030 a0003c0004t0002g0014	49	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(46): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01884.hp2 HG01943.hp1 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02080.hp2 HG02451.hp1 HG02451.hp2 HG02630.hp2 HG02698.hp1 HG02717.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18962.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19043.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.280+883dupA c.280+883dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48386321
chrX:48386321	TA TA	T T	1	a0001c0001t0001g0040 a0001c0001t0001g0040	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.280+883delA c.280+883delA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48386321
chrX:48386364	T T	A A	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.280+917T>A c.280+917T>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7		chrX	48386364
chrX:48386501	A A	AC AC	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.281-806dupC c.281-806dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48386501
chrX:48386658	A A	AG AG	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.281-649dupG c.281-649dupG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48386658
chrX:48386889	TG TG	T T	1	a0001c0001t0001g0058 a0001c0001t0001g0058	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.281-420delG c.281-420delG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48386889
chrX:48386892	A A	AC AC	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.281-418dupC c.281-418dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48386892
chrX:48386952	C C	CT CT	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.281-359_281-358ins others(1): Show c.281-359_281-358insT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7		chrX	48386952
chrX:48387086	G G	GT GT	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.281-222dupT c.281-222dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48387086
chrX:48387215	C C	CA CA	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.281-94dupA c.281-94dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48387215
chrX:48387280	CA CA	C C	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.281-28delA c.281-28delA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48387280
chrX:48387284	GA GA	G G	1	a0001c0001t0001g0058 a0001c0001t0001g0058	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.281-22delA c.281-22delA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	4/7	INFO_REALIGN_3_PRIME	chrX	48387284
chrX:48387400	T T	TC TC	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.330+43dupC c.330+43dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48387400
chrX:48387448	G G	GC GC	2	a0001c0001t0001g0058 a0004c0005t0007g0038 a0001c0001t0001g0058 a0004c0005t0007g0038	2	HG01978.hp2 NA18953.hp1 HG01978.hp2 NA18953.hp1	intron_variant	MODIFIER	c.330+91dupC c.330+91dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48387448
chrX:48387466	T T	TC TC	1	a0001c0001t0001g0051 a0001c0001t0001g0051	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.330+110dupC c.330+110dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48387466
chrX:48387493	T T	TA TA	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.330+133_330+134ins others(1): Show c.330+133_330+134insA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7		chrX	48387493
chrX:48387549	T T	TC TC	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.330+190dupC c.330+190dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48387549
chrX:48387682	A A	C C	1	a0001c0001t0002g0022 a0001c0001t0002g0022	1	HG03516.hp2 HG03516.hp2	intron_variant	MODIFIER	c.330+322A>C c.330+322A>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7		chrX	48387682
chrX:48388008	AG AG	A A	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.330+650delG c.330+650delG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48388008
chrX:48388126	CG CG	C C	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.330+769delG c.330+769delG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48388126
chrX:48388225	T T	TG TG	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.330+868dupG c.330+868dupG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48388225
chrX:48388283	G G	GT GT	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.330+929dupT c.330+929dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48388283
chrX:48388593	G G	GT GT	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.331-753_331-752ins others(1): Show c.331-753_331-752insT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7		chrX	48388593
chrX:48388683	C C	CA CA	25	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0008 others(22): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0008 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0029 a0001c0001t0002g0032 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0039 a0001c0001t0003g0021 a0001c0001t0003g0033 a0001c0001t0003g0048 a0001c0001t0003g0049 a0001c0001t0004g0004 a0002c0002t0002g0002 a0002c0002t0002g0008 a0002c0002t0002g0028 a0003c0004t0002g0014 a0004c0005t0007g0038	37	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(34): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01358.hp1 HG01433.hp1 HG01943.hp1 HG01978.hp2 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02451.hp2 HG02698.hp1 HG02717.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18944.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.331-645dupA c.331-645dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48388683
chrX:48388683	C C	CAA CAA	3	a0001c0001t0002g0019 a0001c0001t0002g0027 a0001c0001t0004g0017 a0001c0001t0002g0019 a0001c0001t0002g0027 a0001c0001t0004g0017	3	HG02080.hp2 HG02809.hp1 NA18962.hp1 HG02080.hp2 HG02809.hp1 NA18962.hp1	intron_variant	MODIFIER	c.331-646_331-645dup others(2): Show c.331-646_331-645dupAA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48388683
chrX:48388683	CA CA	C C	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.331-645delA c.331-645delA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48388683
chrX:48388708	A A	AG AG	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.331-637dupG c.331-637dupG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7	INFO_REALIGN_3_PRIME	chrX	48388708
chrX:48388834	T T	A A	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.331-512T>A c.331-512T>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7		chrX	48388834
chrX:48388950	T T	C C	5	a0001c0001t0001g0006 a0001c0001t0001g0051 a0001c0001t0001g0052 others(2): Show a0001c0001t0001g0006 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0055 a0001c0001t0001g0060	9	HG00621.hp1 HG00642.hp1 HG01081.hp2 others(6): Show HG00621.hp1 HG00642.hp1 HG01081.hp2 HG03130.hp1 HG03688.hp1 HG04115.hp1 NA18970.hp1 NA19079.hp1 NA20905.hp1	intron_variant	MODIFIER	c.331-396T>C c.331-396T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7		chrX	48388950
chrX:48389159	G G	C C	2	a0001c0001t0005g0015 a0001c0001t0005g0016 a0001c0001t0005g0015 a0001c0001t0005g0016	2	NA18906.hp2 NA19043.hp2 NA18906.hp2 NA19043.hp2	intron_variant	MODIFIER	c.331-187G>C c.331-187G>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	5/7		chrX	48389159
chrX:48389518	T T	TC TC	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.466+40dupC c.466+40dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48389518
chrX:48389579	TC TC	T T	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.466+100delC c.466+100delC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48389579
chrX:48389665	T T	TA TA	6	a0001c0001t0002g0012 a0001c0001t0002g0025 a0001c0001t0002g0026 others(3): Show a0001c0001t0002g0012 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0036 a0001c0001t0002g0037 a0004c0005t0007g0038	7	HG01884.hp2 HG01978.hp2 HG02451.hp1 others(4): Show HG01884.hp2 HG01978.hp2 HG02451.hp1 HG02630.hp2 HG03471.hp1 NA18906.hp1 NA20300.hp2	intron_variant	MODIFIER	c.466+192dupA c.466+192dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48389665
chrX:48389719	TC TC	T T	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.466+240delC c.466+240delC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48389719
chrX:48389943	A A	AT AT	1	a0001c0001t0001g0044 a0001c0001t0001g0044	1	HG02615.hp1 HG02615.hp1	intron_variant	MODIFIER	c.466+472dupT c.466+472dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48389943
chrX:48390015	G G	A A	1	a0001c0001t0001g0013 a0001c0001t0001g0013	2	HG02615.hp2 NA18966.hp1 HG02615.hp2 NA18966.hp1	intron_variant	MODIFIER	c.466+534G>A c.466+534G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390015
chrX:48390026	G G	GAA GAA	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.466+548_466+549dup others(2): Show c.466+548_466+549dupAA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48390026
chrX:48390055	A A	G G	1	a0001c0001t0002g0035 a0001c0001t0002g0035	1	HG00735.hp1 HG00735.hp1	intron_variant	MODIFIER	c.466+574A>G c.466+574A>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390055
chrX:48390308	C C	A A	2	a0001c0001t0005g0015 a0001c0001t0005g0016 a0001c0001t0005g0015 a0001c0001t0005g0016	2	NA18906.hp2 NA19043.hp2 NA18906.hp2 NA19043.hp2	intron_variant	MODIFIER	c.466+827C>A c.466+827C>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390308
chrX:48390440	C C	T T	1	a0001c0001t0002g0027 a0001c0001t0002g0027	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.466+959C>T c.466+959C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390440
chrX:48390476	A A	AG AG	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.466+998dupG c.466+998dupG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48390476
chrX:48390476	AG AG	A A	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.466+998delG c.466+998delG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48390476
chrX:48390491	G G	A A	1	a0001c0001t0002g0027 a0001c0001t0002g0027	1	HG02809.hp1 HG02809.hp1	intron_variant	MODIFIER	c.466+1010G>A c.466+1010G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390491
chrX:48390499	C C	T T	1	a0001c0001t0002g0037 a0001c0001t0002g0037	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.466+1018C>T c.466+1018C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390499
chrX:48390532	AC AC	A A	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.466+1053delC c.466+1053delC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48390532
chrX:48390733	T T	TA TA	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.467-1136_467-1135i others(3): Show c.467-1136_467-1135insA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390733
chrX:48390985	G G	C C	2	a0001c0001t0002g0025 a0001c0001t0002g0036 a0001c0001t0002g0025 a0001c0001t0002g0036	2	HG01884.hp2 HG02630.hp2 HG01884.hp2 HG02630.hp2	intron_variant	MODIFIER	c.467-884G>C c.467-884G>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390985
chrX:48390991	T T	C C	1	a0001c0001t0002g0022 a0001c0001t0002g0022	1	HG03516.hp2 HG03516.hp2	intron_variant	MODIFIER	c.467-878T>C c.467-878T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48390991
chrX:48391010	G G	GT GT	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.467-857dupT c.467-857dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48391010
chrX:48391049	A A	AG AG	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.467-818dupG c.467-818dupG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48391049
chrX:48391144	A A	AC AC	3	a0001c0001t0001g0055 a0001c0001t0001g0058 a0001c0001t0002g0018 a0001c0001t0001g0055 a0001c0001t0001g0058 a0001c0001t0002g0018	3	HG00642.hp1 HG02027.hp1 NA18953.hp1 HG00642.hp1 HG02027.hp1 NA18953.hp1	intron_variant	MODIFIER	c.467-721dupC c.467-721dupC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48391144
chrX:48391205	TA TA	T T	1	a0001c0001t0002g0034 a0001c0001t0002g0034	1	HG02897.hp1 HG02897.hp1	intron_variant	MODIFIER	c.467-657delA c.467-657delA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48391205
chrX:48391276	A A	G G	4	a0001c0001t0003g0021 a0001c0001t0003g0033 a0001c0001t0003g0048 others(1): Show a0001c0001t0003g0021 a0001c0001t0003g0033 a0001c0001t0003g0048 a0001c0001t0003g0049	4	HG02451.hp2 HG03209.hp2 HG03453.hp1 others(1): Show HG02451.hp2 HG03209.hp2 HG03453.hp1 HG03579.hp1	intron_variant	MODIFIER	c.467-593A>G c.467-593A>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48391276
chrX:48391310	G G	A A	1	a0001c0001t0003g0033 a0001c0001t0003g0033	1	HG03579.hp1 HG03579.hp1	intron_variant	MODIFIER	c.467-559G>A c.467-559G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48391310
chrX:48391316	C C	CA CA	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.467-549dupA c.467-549dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48391316
chrX:48391521	T T	C C	4	a0001c0001t0003g0021 a0001c0001t0003g0033 a0001c0001t0003g0048 others(1): Show a0001c0001t0003g0021 a0001c0001t0003g0033 a0001c0001t0003g0048 a0001c0001t0003g0049	4	HG02451.hp2 HG03209.hp2 HG03453.hp1 others(1): Show HG02451.hp2 HG03209.hp2 HG03453.hp1 HG03579.hp1	intron_variant	MODIFIER	c.467-348T>C c.467-348T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48391521
chrX:48391636	TG TG	T T	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.467-230delG c.467-230delG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48391636
chrX:48391655	C C	CG CG	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.467-212dupG c.467-212dupG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48391655
chrX:48391698	T T	TA TA	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.467-170dupA c.467-170dupA	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48391698
chrX:48391743	T T	C C	25	a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0008 others(22): Show a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0008 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0032 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0039 a0001c0001t0004g0004 a0001c0001t0004g0017 a0001c0001t0006g0031 a0002c0002t0002g0002 a0002c0002t0002g0008 a0002c0002t0002g0028 a0002c0002t0002g0030 a0003c0004t0002g0014	37	HG00140.hp1 HG00735.hp1 HG01074.hp1 others(34): Show HG00140.hp1 HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01943.hp1 HG01981.hp1 HG02027.hp1 HG02074.hp1 HG02080.hp2 HG02698.hp1 HG02717.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03516.hp1 HG03516.hp2 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18944.hp1 NA18962.hp1 NA18982.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19062.hp1 NA19066.hp1 NA20300.hp1 NA20805.hp1	intron_variant	MODIFIER	c.467-126T>C c.467-126T>C	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48391743
chrX:48391798	CT CT	C C	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.467-67delT c.467-67delT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48391798
chrX:48391844	A A	AT AT	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.467-21dupT c.467-21dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7	INFO_REALIGN_3_PRIME	chrX	48391844
chrX:48391855	C C	CG CG	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.467-14_467-13insG c.467-14_467-13insG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	6/7		chrX	48391855
chrX:48391983	C C	CT CT	1	a0001c0001t0006g0031 a0001c0001t0006g0031	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.4+13dupT c.4+13dupT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7	INFO_REALIGN_3_PRIME	chrX	48391983
chrX:48392058	C C	T T	13	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0044 others(10): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0044 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060	23	HG00621.hp1 HG00642.hp1 HG00673.hp1 others(20): Show HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp2 HG01081.hp2 HG01109.hp1 HG01256.hp1 HG01516.hp2 HG01952.hp1 HG01978.hp1 HG02615.hp1 HG02683.hp2 HG03130.hp1 HG03688.hp1 HG03942.hp1 HG04115.hp1 NA18945.hp1 NA18953.hp1 NA18970.hp1 NA18977.hp1 NA19004.hp1 NA19079.hp1 NA20905.hp1	intron_variant	MODIFIER	c.4+85C>T c.4+85C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392058
chrX:48392120	TC TC	T T	1	a0001c0001t0006g0031 a0001c0001t0006g0031	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.4+150delC c.4+150delC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7	INFO_REALIGN_3_PRIME	chrX	48392120
chrX:48392139	AT AT	A A	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.4+174delT c.4+174delT	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7	INFO_REALIGN_3_PRIME	chrX	48392139
chrX:48392158	AG AG	A A	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.4+188delG c.4+188delG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7	INFO_REALIGN_3_PRIME	chrX	48392158
chrX:48392183	C C	CG CG	1	a0001c0001t0002g0020 a0001c0001t0002g0020	1	HG01358.hp1 HG01358.hp1	intron_variant	MODIFIER	c.4+213dupG c.4+213dupG	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7	INFO_REALIGN_3_PRIME	chrX	48392183
chrX:48392258	TC TC	T T	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.4+287delC c.4+287delC	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7	INFO_REALIGN_3_PRIME	chrX	48392258
chrX:48392272	G G	A A	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.4+299G>A c.4+299G>A	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392272
chrX:48392277	C C	G G	1	a0001c0001t0002g0032 a0001c0001t0002g0032	1	HG01943.hp1 HG01943.hp1	intron_variant	MODIFIER	c.4+304C>G c.4+304C>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392277
chrX:48392435	A A	T T	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.5-321A>T c.5-321A>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392435
chrX:48392445	A A	G G	55	a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0006 others(52): Show a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0013 a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0008 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0018 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0032 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0039 a0001c0001t0003g0021 a0001c0001t0003g0033 a0001c0001t0003g0048 a0001c0001t0003g0049 a0001c0001t0004g0004 a0001c0001t0004g0017 a0001c0001t0005g0015 a0001c0001t0005g0016 a0001c0001t0006g0031 a0002c0002t0002g0002 a0002c0002t0002g0008 a0002c0002t0002g0028 a0002c0002t0002g0030 a0003c0004t0002g0014 a0005c0003t0001g0047	86	HG00140.hp1 HG00621.hp1 HG00642.hp1 others(83): Show HG00140.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01109.hp1 HG01256.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp2 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01981.hp1 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02129.hp1 HG02451.hp1 HG02451.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02809.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03017.hp1 HG03130.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03688.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18953.hp1 NA18962.hp1 NA18966.hp1 NA18970.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp2 NA19004.hp1 NA19043.hp2 NA19056.hp1 NA19062.hp1 NA19066.hp1 NA19079.hp1 NA19088.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1	intron_variant	MODIFIER	c.5-311A>G c.5-311A>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392445
chrX:48392506	C C	T T	1	a0004c0005t0007g0038 a0004c0005t0007g0038	1	HG01978.hp2 HG01978.hp2	intron_variant	MODIFIER	c.5-250C>T c.5-250C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392506
chrX:48392628	C C	T T	2	a0001c0001t0002g0011 a0001c0001t0002g0024 a0001c0001t0002g0011 a0001c0001t0002g0024	3	HG00140.hp1 HG03239.hp2 HG03516.hp1 HG00140.hp1 HG03239.hp2 HG03516.hp1	intron_variant	MODIFIER	c.5-128C>T c.5-128C>T	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392628
chrX:48392659	C C	G G	62	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 others(59): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0009 a0001c0001t0001g0013 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0002g0002 a0001c0001t0002g0004 a0001c0001t0002g0008 a0001c0001t0002g0010 a0001c0001t0002g0011 a0001c0001t0002g0012 a0001c0001t0002g0018 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0032 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0039 a0001c0001t0003g0021 a0001c0001t0003g0033 a0001c0001t0003g0048 a0001c0001t0003g0049 a0001c0001t0004g0004 a0001c0001t0004g0017 a0001c0001t0005g0015 a0001c0001t0005g0016 a0001c0001t0006g0031 a0002c0002t0002g0002 a0002c0002t0002g0008 a0002c0002t0002g0028 a0002c0002t0002g0030 a0003c0004t0002g0014 a0004c0005t0007g0038 a0005c0003t0001g0047	103	HG00140.hp1 HG00621.hp1 HG00642.hp1 others(100): Show HG00140.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01109.hp1 HG01256.hp1 HG01258.hp1 HG01358.hp1 HG01433.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02027.hp1 HG02040.hp1 HG02074.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02145.hp1 HG02165.hp1 HG02165.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG03017.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03688.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18953.hp1 NA18955.hp1 NA18962.hp1 NA18966.hp1 NA18970.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18986.hp1 NA18994.hp1 NA18999.hp1 NA18999.hp2 NA19004.hp1 NA19043.hp2 NA19056.hp1 NA19062.hp1 NA19066.hp1 NA19079.hp1 NA19088.hp1 NA19091.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1	intron_variant	MODIFIER	c.5-97C>G c.5-97C>G	SSX4	ENSG00000268009.6	transcript	ENST00000595689.3	protein_coding	7/7		chrX	48392659

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🧬 JoGo Online Haplotype Explorer SSX4_chrX_48378539_48398347

JoGo Local Haplotype Explorer (on iGV) SSX4_chrX_48378539_48398347

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 5)

CCoding Level Haplotype Info (Total: 5)

TTranscript Level Haplotype Info (Total: 7)

GGenebody Level Haplotype Info (Total: 60)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 5)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 10)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 63)

Haplotype Details by Sample (Haploid Level) (Total: 104)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 8)

CCoding Level Variants (Synonymous Mutations) (Total: 0)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 9)

GGenebody Level Haplotype Variants (Intron) (Total: 125)

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Annotation (Repeats)

Annotation (SNP Array)