Joint Open Genome and Omics Platform (JoGo)

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geneid	6757
ensemblid	ENSG00000241476.9
hgncid	11336
symbol	SSX2
name	SSX family member 2
refseq_nuc	NM_175698.4
refseq_prot	NP_783629.1
ensembl_nuc	ENST00000337502.6
ensembl_prot	ENSP00000338561.5
mane_status	MANE Select
chr	chrX
start	52696896
end	52707178
strand	-
ver	v1.2
region	chrX:52696896-52707178
region5000	chrX:52691896-52712178
regionname0	SSX2_chrX_52696896_52707178
regionname5000	SSX2_chrX_52691896_52712178

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	188	94	22	25	30	3	14	14	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0002	0/0	188	2	0	0	2	0	0	2	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0003	0/0	169	1	1	0	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0004	0/0	188	1	1	0	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	567	82	19	22	27	2	12	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
c0002	0/0	567	12	3	3	3	1	2	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
c0003	0/0	567	2	0	0	2	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
c0004	0/0	567	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
c0005	0/0	568	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	719	28	7	10	9	0	2	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0002	0/0	717	16	4	5	4	0	3	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0003	0/0	721	12	3	2	2	2	3	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0004	0/0	715	12	2	4	4	1	1	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0005	0/0	713	9	2	0	4	0	3	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0006	0/0	723	4	0	3	0	0	1	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0007	0/0	711	4	2	0	1	0	1	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0008	0/0	718	2	1	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0009	0/0	709	2	1	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0010	0/0	717	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0011	0/0	717	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0012	0/0	715	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0013	0/0	723	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0014	0/0	720	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0015	0/0	717	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0016	0/0	718	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0017	0/0	707	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
t0018	0/0	723	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	6	1	3	2	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0002	0/0	5	0	0	3	0	2	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0003	0/0	5	0	3	1	1	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0004	0/0	4	0	1	2	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0005	0/0	2	2	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0006	0/0	2	1	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0007	0/0	2	0	1	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0008	0/0	2	0	0	1	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0009	0/0	2	0	0	1	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0010	0/0	2	0	1	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0011	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0012	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0013	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0014	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0015	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0016	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0017	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0018	0/0	1	0	0	0	1	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0019	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0020	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0021	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0022	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0023	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0024	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0025	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0026	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0027	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0028	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0029	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0030	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0031	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0032	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0033	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0034	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0035	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0036	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0037	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0038	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0039	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0040	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0041	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0042	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0043	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0044	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0045	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0046	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0047	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0048	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0049	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0050	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0051	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0052	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0053	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0054	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0055	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0056	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0057	0/0	1	0	0	0	1	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0058	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0059	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0060	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0061	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0062	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0063	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0064	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0065	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0066	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0067	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0068	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0069	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0070	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0071	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0072	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0073	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0074	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0075	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
g0076	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	567	82	19	22	27	2	12	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0002	0/0	567	12	3	3	3	1	2	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0002c0003	0/0	567	2	0	0	2	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0003c0005	0/0	568	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0004c0004	0/0	567	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1285	24	6	10	6	0	2	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0002	0/0	1283	14	4	3	4	0	3	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0003	0/0	1287	11	3	2	2	1	3	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0004	0/0	1281	11	1	4	4	1	1	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0005	0/0	1279	6	1	0	3	0	2	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0006	0/0	1289	4	0	3	0	0	1	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0007	0/0	1277	3	2	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0008	0/0	1284	2	1	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0009	0/0	1275	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0011	0/0	1283	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0012	0/0	1281	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0013	0/0	1289	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0015	0/0	1283	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0016	0/0	1284	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0001t0018	0/0	1289	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0002t0001	0/0	1285	3	1	0	2	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0002t0002	0/0	1283	2	0	2	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0002t0003	0/0	1287	1	0	0	0	1	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0002t0004	0/0	1281	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0002t0005	0/0	1279	3	1	0	1	0	1	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0002t0007	0/0	1277	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0001c0002t0017	0/0	1273	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0002c0003t0001	0/0	1285	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0002c0003t0010	0/0	1283	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0003c0005t0009	0/0	1276	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178
a0004c0004t0014	0/0	1286	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	copy fasta	chrX	52691896	52712178

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	6	1	3	2	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0004	0/0	4	0	1	2	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0013	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0014	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0027	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0028	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0031	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0041	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0045	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0048	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0058	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0063	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0064	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0072	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0074	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0001g0076	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0002g0002	0/0	5	0	0	3	0	2	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0002g0010	0/0	2	0	1	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0002g0024	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0002g0037	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0002g0042	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0002g0046	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0002g0060	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0002g0067	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0002g0068	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0003g0005	0/0	2	2	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0003g0007	0/0	2	0	1	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0003g0025	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0003g0032	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0003g0033	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0003g0043	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0003g0055	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0003g0057	0/0	1	0	0	0	1	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0003g0073	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0004g0003	0/0	5	0	3	1	1	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0004g0008	0/0	2	0	0	1	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0004g0026	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0004g0034	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0004g0052	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0004g0062	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0005g0009	0/0	2	0	0	1	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0005g0040	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0005g0050	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0005g0059	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0005g0075	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0006g0036	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0006g0039	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0006g0044	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0006g0053	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0007g0054	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0007g0065	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0007g0066	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0008g0006	0/0	2	1	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0009g0038	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0011g0049	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0012g0061	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0013g0030	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0015g0056	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0016g0047	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0001t0018g0051	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0001g0016	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0001g0019	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0001g0071	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0002g0012	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0002g0023	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0003g0018	0/0	1	0	0	0	1	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0004g0020	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0005g0017	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0005g0022	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0005g0069	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0007g0021	0/0	1	0	0	0	0	1	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0001c0002t0017g0015	0/0	1	0	1	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0002c0003t0001g0029	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0002c0003t0010g0035	0/0	1	0	0	1	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0003c0005t0009g0070	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
a0004c0004t0014g0011	0/0	1	1	0	0	0	0	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0002	t0003	g0018	EUR	GBR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG00099	hp2	a0001	c0001	t0003	g0057	EUR	GBR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG00280	hp1	a0001	c0001	t0004	g0003	EUR	FIN	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG00408	hp1	a0001	c0001	t0005	g0009	EAS	CHS	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG00408	hp2	a0001	c0001	t0008	g0006	EAS	CHS	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG00438	hp1	a0001	c0001	t0005	g0050	EAS	CHS	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG00438	hp2	a0001	c0001	t0009	g0038	EAS	CHS	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG00609	hp1	a0001	c0001	t0004	g0026	EAS	CHS	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG00673	hp1	a0001	c0001	t0004	g0008	EAS	CHS	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG00741	hp1	a0001	c0001	t0001	g0004	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG00741	hp2	a0001	c0001	t0006	g0036	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01069	hp1	a0001	c0001	t0002	g0042	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01099	hp1	a0001	c0001	t0002	g0046	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01106	hp1	a0001	c0001	t0003	g0033	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01167	hp1	a0001	c0002	t0002	g0023	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01168	hp1	a0001	c0001	t0001	g0072	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01168	hp2	a0001	c0001	t0001	g0076	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01169	hp1	a0001	c0001	t0001	g0028	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01169	hp2	a0001	c0002	t0002	g0012	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01175	hp1	a0001	c0001	t0002	g0010	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01175	hp2	a0001	c0001	t0001	g0074	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01192	hp1	a0001	c0001	t0006	g0044	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01243	hp1	a0001	c0002	t0017	g0015	AMR	PUR	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01884	hp1	a0001	c0001	t0001	g0064	AFR	ACB	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01884	hp2	a0001	c0001	t0001	g0063	AFR	ACB	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01928	hp1	a0001	c0001	t0004	g0003	AMR	PEL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01934	hp1	a0001	c0001	t0001	g0013	AMR	PEL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01975	hp2	a0001	c0001	t0006	g0039	AMR	PEL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01978	hp1	a0001	c0001	t0004	g0034	AMR	PEL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01978	hp2	a0001	c0001	t0003	g0007	AMR	PEL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01993	hp1	a0001	c0001	t0001	g0045	AMR	PEL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG01993	hp2	a0001	c0001	t0004	g0003	AMR	PEL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02015	hp1	a0001	c0002	t0005	g0069	EAS	KHV	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02027	hp1	a0001	c0001	t0001	g0058	EAS	KHV	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02040	hp1	a0001	c0001	t0015	g0056	EAS	KHV	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02055	hp1	a0001	c0001	t0001	g0027	AFR	ACB	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02056	hp1	a0001	c0001	t0005	g0059	EAS	KHV	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02071	hp1	a0001	c0001	t0001	g0004	EAS	KHV	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02080	hp1	a0001	c0001	t0002	g0002	EAS	KHV	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02080	hp2	a0001	c0001	t0002	g0002	EAS	KHV	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02083	hp1	a0001	c0001	t0003	g0007	EAS	KHV	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02132	hp1	a0001	c0001	t0001	g0004	EAS	KHV	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02258	hp1	a0001	c0001	t0002	g0068	AFR	ACB	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02293	hp2	a0001	c0001	t0004	g0003	AMR	PEL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02451	hp1	a0001	c0001	t0001	g0001	AFR	ACB	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02451	hp2	a0001	c0001	t0002	g0037	AFR	ACB	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02572	hp1	a0001	c0001	t0002	g0024	AFR	GWD	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02602	hp1	a0001	c0002	t0005	g0017	SAS	PJL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02622	hp1	a0001	c0001	t0007	g0066	AFR	GWD	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02622	hp2	a0001	c0002	t0005	g0022	AFR	GWD	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02698	hp1	a0001	c0001	t0003	g0043	SAS	PJL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02809	hp1	a0001	c0001	t0008	g0006	AFR	GWD	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02809	hp2	a0001	c0001	t0002	g0067	AFR	GWD	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02895	hp1	a0001	c0001	t0001	g0014	AFR	GWD	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG02965	hp1	a0001	c0001	t0001	g0048	AFR	ESN	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03017	hp1	a0001	c0001	t0006	g0053	SAS	PJL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03041	hp1	a0001	c0001	t0003	g0005	AFR	GWD	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03041	hp2	a0001	c0001	t0007	g0065	AFR	GWD	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03098	hp1	a0003	c0005	t0009	g0070	AFR	MSL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03139	hp1	a0001	c0001	t0003	g0005	AFR	ESN	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03490	hp1	a0001	c0002	t0007	g0021	SAS	PJL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03492	hp1	a0001	c0001	t0004	g0008	SAS	PJL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03516	hp1	a0001	c0001	t0003	g0055	AFR	ESN	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03516	hp2	a0001	c0002	t0001	g0071	AFR	ESN	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03654	hp1	a0001	c0001	t0005	g0040	SAS	PJL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03704	hp1	a0001	c0001	t0002	g0010	SAS	PJL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03704	hp2	a0001	c0001	t0003	g0073	SAS	PJL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03710	hp1	a0001	c0001	t0003	g0025	SAS	PJL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03834	hp1	a0001	c0001	t0002	g0002	SAS	BEB	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03834	hp2	a0001	c0001	t0001	g0041	SAS	BEB	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03942	hp1	a0001	c0001	t0002	g0002	SAS	BEB	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG04228	hp1	a0001	c0001	t0001	g0004	SAS	STU	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18522	hp1	a0001	c0001	t0012	g0061	AFR	YRI	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18612	hp1	a0001	c0002	t0001	g0019	EAS	CHB	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18906	hp1	a0001	c0002	t0004	g0020	AFR	YRI	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18906	hp2	a0004	c0004	t0014	g0011	AFR	YRI	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18944	hp1	a0001	c0002	t0001	g0016	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18948	hp1	a0002	c0003	t0001	g0029	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18974	hp1	a0002	c0003	t0010	g0035	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18977	hp1	a0001	c0001	t0002	g0060	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18983	hp1	a0001	c0001	t0002	g0002	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18984	hp1	a0001	c0001	t0018	g0051	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18990	hp1	a0001	c0001	t0007	g0054	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA18994	hp1	a0001	c0001	t0003	g0032	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA19000	hp1	a0001	c0001	t0013	g0030	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA19012	hp1	a0001	c0001	t0004	g0052	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA19043	hp1	a0001	c0001	t0004	g0062	AFR	LWK	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA19060	hp1	a0001	c0001	t0011	g0049	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA19070	hp1	a0001	c0001	t0004	g0003	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA19083	hp1	a0001	c0001	t0016	g0047	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA19091	hp1	a0001	c0001	t0001	g0031	EAS	JPT	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
NA20905	hp1	a0001	c0001	t0005	g0009	SAS	GIH	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178
HG03471	hp1	a0001	c0001	t0005	g0075	AFR	MSL	SSX2_chrX_52691896_52712178	SSX2	chrX	52691896	52712178

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:52698073	T T	TC TC	1	a0003 a0003	1	HG03098.hp1 HG03098.hp1	frameshift_variant	HIGH	c.481dupG c.481dupG	p.Glu161fs p.Glu161fs	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	7/8	568/1281	481/567	161/188	chrX	52698073
chrX:52698079	C C	G G	1	a0002 a0002	2	NA18948.hp1 NA18974.hp1 NA18948.hp1 NA18974.hp1	missense_variant	MODERATE	c.476G>C c.476G>C	p.Arg159Thr p.Arg159Thr	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	7/8	563/1281	476/567	159/188	chrX	52698079
chrX:52705690	C C	G G	1	a0004 a0004	1	NA18906.hp2 NA18906.hp2	missense_variant	MODERATE	c.60G>C c.60G>C	p.Lys20Asn p.Lys20Asn	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	2/8	147/1281	60/567	20/188	chrX	52705690

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrX:52705183	C C	T T	3	a0001c0002 a0003c0005 a0004c0004 a0001c0002 a0003c0005 a0004c0004	14	HG00099.hp1 HG01167.hp1 HG01169.hp2 others(11): Show HG00099.hp1 HG01167.hp1 HG01169.hp2 HG01243.hp1 HG02015.hp1 HG02602.hp1 HG02622.hp2 HG03098.hp1 HG03490.hp1 HG03516.hp2 NA18612.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1	synonymous_variant	LOW	c.129G>A c.129G>A	p.Ser43Ser p.Ser43Ser	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	3/8	216/1281	129/567	43/188			chrX	52705183

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:52696910	GT GT	G G	1	a0001c0001t0016 a0001c0001t0016	1	NA19083.hp1 NA19083.hp1	3_prime_UTR_variant	MODIFIER	c.612delA c.612delA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	1077	chrX	52696910
chrX:52696925	G G	GT GT	1	a0001c0001t0011 a0001c0001t0011	1	NA19060.hp1 NA19060.hp1	3_prime_UTR_variant	MODIFIER	c.597dupA c.597dupA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	1062	chrX	52696925
chrX:52696989	CT CT	C C	1	a0001c0001t0011 a0001c0001t0011	1	NA19060.hp1 NA19060.hp1	3_prime_UTR_variant	MODIFIER	c.533delA c.533delA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	998	chrX	52696989
chrX:52697037	ACTG ACTG	A A	1	a0001c0001t0015 a0001c0001t0015	1	HG02040.hp1 HG02040.hp1	3_prime_UTR_variant	MODIFIER	c.483_485delCAG c.483_485delCAG	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	948	chrX	52697037
chrX:52697047	G G	GGT GGT	2	a0001c0001t0002 a0001c0002t0002 a0001c0001t0002 a0001c0002t0002	16	HG01069.hp1 HG01099.hp1 HG01167.hp1 others(13): Show HG01069.hp1 HG01099.hp1 HG01167.hp1 HG01169.hp2 HG01175.hp1 HG02080.hp1 HG02080.hp2 HG02258.hp1 HG02451.hp2 HG02572.hp1 HG02809.hp2 HG03704.hp1 HG03834.hp1 HG03942.hp1 NA18977.hp1 NA18983.hp1	3_prime_UTR_variant	MODIFIER	c.474_475dupAC c.474_475dupAC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	940	chrX	52697047
chrX:52697047	G G	GGTGT GGTGT	5	a0001c0001t0001 a0001c0001t0016 a0001c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0016 a0001c0002t0001 a0002c0003t0001 a0002c0003t0010	30	HG00741.hp1 HG01168.hp1 HG01168.hp2 others(27): Show HG00741.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp2 HG01884.hp1 HG01884.hp2 HG01934.hp1 HG01943.hp1 HG01975.hp1 HG01993.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02132.hp1 HG02293.hp1 HG02451.hp1 HG02895.hp1 HG02965.hp1 HG03516.hp2 HG03834.hp2 HG04228.hp1 NA18612.hp1 NA18944.hp1 NA18948.hp1 NA18974.hp1 NA19009.hp1 NA19066.hp1 NA19083.hp1 NA19091.hp1	3_prime_UTR_variant	MODIFIER	c.472_475dupACAC c.472_475dupACAC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	940	chrX	52697047
chrX:52697047	G G	GGTGTGT GGTGTGT	2	a0001c0001t0003 a0001c0002t0003 a0001c0001t0003 a0001c0002t0003	12	HG00099.hp1 HG00099.hp2 HG01106.hp1 others(9): Show HG00099.hp1 HG00099.hp2 HG01106.hp1 HG01978.hp2 HG02083.hp1 HG02698.hp1 HG03041.hp1 HG03139.hp1 HG03516.hp1 HG03704.hp2 HG03710.hp1 NA18994.hp1	3_prime_UTR_variant	MODIFIER	c.470_475dupACACAC c.470_475dupACACAC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	940	chrX	52697047
chrX:52697047	G G	GGTGTGTG others(1): Show GGTGTGTGT	2	a0001c0001t0006 a0001c0001t0018 a0001c0001t0006 a0001c0001t0018	5	HG00741.hp2 HG01192.hp1 HG01975.hp2 others(2): Show HG00741.hp2 HG01192.hp1 HG01975.hp2 HG03017.hp1 NA18984.hp1	3_prime_UTR_variant	MODIFIER	c.468_475dupACACAC others(2): Show c.468_475dupACACACAC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	940	chrX	52697047
chrX:52697047	G G	GTGT GTGT	1	a0001c0001t0008 a0001c0001t0008	2	HG00408.hp2 HG02809.hp1 HG00408.hp2 HG02809.hp1	3_prime_UTR_variant	MODIFIER	c.475_476insACA c.475_476insACA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	940	chrX	52697047
chrX:52697047	G G	GTGTGTGT GTGTGTGT	1	a0001c0001t0013 a0001c0001t0013	1	NA19000.hp1 NA19000.hp1	3_prime_UTR_variant	MODIFIER	c.475_476insACACAC others(1): Show c.475_476insACACACA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	940	chrX	52697047
chrX:52697047	GGT GGT	G G	2	a0001c0001t0005 a0001c0002t0005 a0001c0001t0005 a0001c0002t0005	9	HG00408.hp1 HG00438.hp1 HG02015.hp1 others(6): Show HG00408.hp1 HG00438.hp1 HG02015.hp1 HG02056.hp1 HG02602.hp1 HG02622.hp2 HG03471.hp1 HG03654.hp1 NA20905.hp1	3_prime_UTR_variant	MODIFIER	c.474_475delAC c.474_475delAC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	939	chrX	52697047
chrX:52697047	GGTGT GGTGT	G G	2	a0001c0001t0007 a0001c0002t0007 a0001c0001t0007 a0001c0002t0007	4	HG02622.hp1 HG03041.hp2 HG03490.hp1 others(1): Show HG02622.hp1 HG03041.hp2 HG03490.hp1 NA18990.hp1	3_prime_UTR_variant	MODIFIER	c.472_475delACAC c.472_475delACAC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	937	chrX	52697047
chrX:52697047	GGTGTGT GGTGTGT	G G	2	a0001c0001t0009 a0003c0005t0009 a0001c0001t0009 a0003c0005t0009	2	HG00438.hp2 HG03098.hp1 HG00438.hp2 HG03098.hp1	3_prime_UTR_variant	MODIFIER	c.470_475delACACAC c.470_475delACACAC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	935	chrX	52697047
chrX:52697047	GGTGTGTG others(1): Show GGTGTGTGT	G G	1	a0001c0002t0017 a0001c0002t0017	1	HG01243.hp1 HG01243.hp1	3_prime_UTR_variant	MODIFIER	c.468_475delACACAC others(2): Show c.468_475delACACACAC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	933	chrX	52697047
chrX:52697089	T T	TGTG TGTG	1	a0001c0001t0011 a0001c0001t0011	1	NA19060.hp1 NA19060.hp1	3_prime_UTR_variant	MODIFIER	c.433_434insCAC c.433_434insCAC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	898	chrX	52697089
chrX:52697090	G G	GT GT	1	a0001c0001t0013 a0001c0001t0013	1	NA19000.hp1 NA19000.hp1	3_prime_UTR_variant	MODIFIER	c.432_433insA c.432_433insA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	897	chrX	52697090
chrX:52697090	G G	GTGTGT GTGTGT	2	a0001c0001t0015 a0004c0004t0014 a0001c0001t0015 a0004c0004t0014	2	HG02040.hp1 NA18906.hp2 HG02040.hp1 NA18906.hp2	3_prime_UTR_variant	MODIFIER	c.432_433insACACA c.432_433insACACA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	897	chrX	52697090
chrX:52697096	GT GT	G G	1	a0002c0003t0010 a0002c0003t0010	1	NA18974.hp1 NA18974.hp1	3_prime_UTR_variant	MODIFIER	c.426delA c.426delA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	891	chrX	52697096
chrX:52697132	A A	G G	1	a0001c0001t0012 a0001c0001t0012	1	NA18522.hp1 NA18522.hp1	3_prime_UTR_variant	MODIFIER	c.391T>C c.391T>C	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	856	chrX	52697132
chrX:52697136	GA GA	G G	1	a0001c0001t0011 a0001c0001t0011	1	NA19060.hp1 NA19060.hp1	3_prime_UTR_variant	MODIFIER	c.386delT c.386delT	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	851	chrX	52697136
chrX:52697174	TG TG	T T	1	a0002c0003t0010 a0002c0003t0010	1	NA18974.hp1 NA18974.hp1	3_prime_UTR_variant	MODIFIER	c.348delC c.348delC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	813	chrX	52697174
chrX:52697235	G G	A A	1	a0001c0001t0018 a0001c0001t0018	1	NA18984.hp1 NA18984.hp1	3_prime_UTR_variant	MODIFIER	c.288C>T c.288C>T	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	8/8	753	chrX	52697235

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:52697533	G G	C C	1	a0001c0002t0005g0022 a0001c0002t0005g0022	1	HG02622.hp2 HG02622.hp2	intron_variant	MODIFIER	c.5-15C>G c.5-15C>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	7/7	chrX	52697533
chrX:52697757	TG TG	T T	1	a0002c0003t0010g0035 a0002c0003t0010g0035	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.4+226delC c.4+226delC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	7/7	chrX	52697757
chrX:52697896	TGG TGG	T T	1	a0001c0001t0002g0042 a0001c0001t0002g0042	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.4+86_4+87delCC c.4+86_4+87delCC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	7/7	chrX	52697896
chrX:52698154	CA CA	C C	1	a0001c0002t0002g0012 a0001c0002t0002g0012	1	HG01169.hp2 HG01169.hp2	intron_variant	MODIFIER	c.467-67delT c.467-67delT	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698154
chrX:52698204	TC TC	T T	1	a0001c0001t0003g0043 a0001c0001t0003g0043	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.467-117delG c.467-117delG	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698204
chrX:52698239	A A	AG AG	1	a0001c0001t0002g0060 a0001c0001t0002g0060	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.467-152dupC c.467-152dupC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698239
chrX:52698337	C C	CG CG	1	a0001c0001t0002g0060 a0001c0001t0002g0060	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.467-250dupC c.467-250dupC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698337
chrX:52698446	A A	AT AT	1	a0001c0002t0017g0015 a0001c0002t0017g0015	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.467-359dupA c.467-359dupA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698446
chrX:52698446	AT AT	A A	2	a0001c0001t0016g0047 a0001c0002t0002g0012 a0001c0001t0016g0047 a0001c0002t0002g0012	2	HG01169.hp2 NA19083.hp1 HG01169.hp2 NA19083.hp1	intron_variant	MODIFIER	c.467-359delA c.467-359delA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698446
chrX:52698483	CA CA	C C	1	a0001c0001t0002g0060 a0001c0001t0002g0060	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.467-396delT c.467-396delT	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698483
chrX:52698512	G G	T T	1	a0001c0001t0002g0060 a0001c0001t0002g0060	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.467-424C>A c.467-424C>A	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698512
chrX:52698513	T T	G G	1	a0001c0001t0002g0060 a0001c0001t0002g0060	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.467-425A>C c.467-425A>C	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698513
chrX:52698544	T T	C C	2	a0001c0001t0004g0062 a0001c0001t0012g0061 a0001c0001t0004g0062 a0001c0001t0012g0061	2	NA18522.hp1 NA19043.hp1 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.467-456A>G c.467-456A>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698544
chrX:52698701	C C	CA CA	1	a0001c0001t0002g0042 a0001c0001t0002g0042	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.467-614dupT c.467-614dupT	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698701
chrX:52698716	T T	C C	1	a0001c0001t0003g0025 a0001c0001t0003g0025	1	HG03710.hp1 HG03710.hp1	intron_variant	MODIFIER	c.467-628A>G c.467-628A>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698716
chrX:52698741	G G	GT GT	1	a0001c0001t0006g0053 a0001c0001t0006g0053	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.467-654dupA c.467-654dupA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698741
chrX:52698741	GT GT	G G	3	a0001c0001t0001g0048 a0001c0002t0005g0069 a0004c0004t0014g0011 a0001c0001t0001g0048 a0001c0002t0005g0069 a0004c0004t0014g0011	3	HG02015.hp1 HG02965.hp1 NA18906.hp2 HG02015.hp1 HG02965.hp1 NA18906.hp2	intron_variant	MODIFIER	c.467-654delA c.467-654delA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698741
chrX:52698806	T T	TG TG	2	a0001c0001t0004g0034 a0001c0002t0017g0015 a0001c0001t0004g0034 a0001c0002t0017g0015	2	HG01243.hp1 HG01978.hp1 HG01243.hp1 HG01978.hp1	intron_variant	MODIFIER	c.467-719dupC c.467-719dupC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698806
chrX:52698857	T T	A A	1	a0001c0001t0007g0066 a0001c0001t0007g0066	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.467-769A>T c.467-769A>T	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698857
chrX:52698878	T T	C C	14	a0001c0001t0001g0004 a0001c0001t0001g0031 a0001c0001t0002g0002 others(11): Show a0001c0001t0001g0004 a0001c0001t0001g0031 a0001c0001t0002g0002 a0001c0001t0002g0060 a0001c0001t0003g0033 a0001c0001t0004g0003 a0001c0001t0004g0026 a0001c0001t0004g0034 a0001c0001t0005g0009 a0001c0001t0005g0040 a0001c0001t0005g0050 a0001c0001t0005g0059 a0001c0001t0006g0039 a0001c0001t0013g0030	26	HG00280.hp1 HG00408.hp1 HG00438.hp1 others(23): Show HG00280.hp1 HG00408.hp1 HG00438.hp1 HG00609.hp1 HG00741.hp1 HG01106.hp1 HG01928.hp1 HG01975.hp2 HG01978.hp1 HG01993.hp2 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02132.hp1 HG02293.hp2 HG03654.hp1 HG03834.hp1 HG03942.hp1 HG04228.hp1 NA18977.hp1 NA18983.hp1 NA19000.hp1 NA19070.hp1 NA19091.hp1 NA20905.hp1	intron_variant	MODIFIER	c.467-790A>G c.467-790A>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698878
chrX:52698993	C C	CA CA	1	a0001c0001t0002g0042 a0001c0001t0002g0042	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.467-906dupT c.467-906dupT	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52698993
chrX:52699136	A A	G G	2	a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0063 a0001c0001t0001g0064	2	HG01884.hp1 HG01884.hp2 HG01884.hp1 HG01884.hp2	intron_variant	MODIFIER	c.467-1048T>C c.467-1048T>C	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52699136
chrX:52699168	TC TC	T T	1	a0002c0003t0010g0035 a0002c0003t0010g0035	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.467-1081delG c.467-1081delG	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52699168
chrX:52699235	AG AG	A A	1	a0001c0001t0002g0060 a0001c0001t0002g0060	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.467-1148delC c.467-1148delC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52699235
chrX:52699465	T T	C C	1	a0001c0001t0005g0075 a0001c0001t0005g0075	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.466+978A>G c.466+978A>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52699465
chrX:52699509	A A	AC AC	1	a0001c0001t0002g0042 a0001c0001t0002g0042	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.466+933_466+934ins others(1): Show c.466+933_466+934insG	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52699509
chrX:52699547	TG TG	T T	1	a0001c0001t0002g0042 a0001c0001t0002g0042	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.466+895delC c.466+895delC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52699547
chrX:52699877	G G	C C	1	a0003c0005t0009g0070 a0003c0005t0009g0070	1	HG03098.hp1 HG03098.hp1	intron_variant	MODIFIER	c.466+566C>G c.466+566C>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52699877
chrX:52700121	T T	G G	1	a0001c0001t0005g0040 a0001c0001t0005g0040	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.466+322A>C c.466+322A>C	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52700121
chrX:52700200	C C	T T	1	a0001c0001t0001g0041 a0001c0001t0001g0041	1	HG03834.hp2 HG03834.hp2	intron_variant	MODIFIER	c.466+243G>A c.466+243G>A	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	6/7	chrX	52700200
chrX:52700776	AG AG	A A	1	a0001c0002t0002g0012 a0001c0002t0002g0012	1	HG01169.hp2 HG01169.hp2	intron_variant	MODIFIER	c.331-199delC c.331-199delC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52700776
chrX:52700944	C C	T T	1	a0001c0001t0001g0014 a0001c0001t0001g0014	1	HG02895.hp1 HG02895.hp1	intron_variant	MODIFIER	c.331-366G>A c.331-366G>A	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52700944
chrX:52701223	TTTTTTTT others(13): Show TTTTTTTTCTTTCTTTCTTTC	T T	1	a0001c0001t0001g0031 a0001c0001t0001g0031	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.331-665_331-646del others(20): Show c.331-665_331-646delGAAAGAAAGAAAGAAAAAAA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701223
chrX:52701224	TTTTTTTC others(12): Show TTTTTTTCTTTCTTTCTTTC	T T	1	a0001c0001t0013g0030 a0001c0001t0013g0030	1	NA19000.hp1 NA19000.hp1	intron_variant	MODIFIER	c.331-665_331-647del others(19): Show c.331-665_331-647delGAAAGAAAGAAAGAAAAAA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701224
chrX:52701243	C C	CT CT	41	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 others(38): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0058 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0002g0002 a0001c0001t0002g0024 a0001c0001t0002g0037 a0001c0001t0003g0005 a0001c0001t0003g0007 a0001c0001t0003g0025 a0001c0001t0003g0055 a0001c0001t0003g0057 a0001c0001t0004g0003 a0001c0001t0004g0008 a0001c0001t0004g0026 a0001c0001t0004g0052 a0001c0001t0005g0009 a0001c0001t0005g0040 a0001c0001t0005g0059 a0001c0001t0006g0036 a0001c0001t0006g0039 a0001c0001t0006g0053 a0001c0001t0008g0006 a0001c0001t0009g0038 a0001c0001t0015g0056 a0001c0001t0018g0051 a0001c0002t0001g0016 a0001c0002t0001g0019 a0001c0002t0001g0071 a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0003g0018 a0001c0002t0004g0020 a0001c0002t0005g0069 a0001c0002t0007g0021 a0001c0002t0017g0015 a0002c0003t0001g0029 a0002c0003t0010g0035 a0004c0004t0014g0011	62	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(59): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp2 HG00609.hp1 HG00673.hp1 HG00741.hp1 HG00741.hp2 HG01167.hp1 HG01169.hp2 HG01243.hp1 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp2 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02132.hp1 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02809.hp1 HG03017.hp1 HG03041.hp1 HG03139.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03654.hp1 HG03710.hp1 HG03834.hp1 HG03942.hp1 HG04228.hp1 NA18612.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18948.hp1 NA18974.hp1 NA18983.hp1 NA18984.hp1 NA19009.hp1 NA19012.hp1 NA19066.hp1 NA19070.hp1 NA20905.hp1	intron_variant	MODIFIER	c.331-666dupA c.331-666dupA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701243
chrX:52701243	C C	CTT CTT	7	a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0003g0032 others(4): Show a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0003g0032 a0001c0001t0003g0033 a0001c0001t0004g0034 a0001c0002t0005g0017 a0003c0005t0009g0070	7	HG01106.hp1 HG01169.hp1 HG01978.hp1 others(4): Show HG01106.hp1 HG01169.hp1 HG01978.hp1 HG02055.hp1 HG02602.hp1 HG03098.hp1 NA18994.hp1	intron_variant	MODIFIER	c.331-667_331-666dup others(2): Show c.331-667_331-666dupAA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701243
chrX:52701243	CT CT	C C	2	a0001c0001t0004g0062 a0001c0001t0012g0061 a0001c0001t0004g0062 a0001c0001t0012g0061	2	NA18522.hp1 NA19043.hp1 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.331-666delA c.331-666delA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701243
chrX:52701243	CTT CTT	C C	5	a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0076 others(2): Show a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0002g0010 a0001c0001t0003g0073	6	HG01168.hp1 HG01168.hp2 HG01175.hp1 others(3): Show HG01168.hp1 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG03704.hp1 HG03704.hp2	intron_variant	MODIFIER	c.331-667_331-666del others(2): Show c.331-667_331-666delAA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701243
chrX:52701245	T T	TTC TTC	3	a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0002t0005g0022 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0002t0005g0022	3	HG02622.hp1 HG02622.hp2 HG03041.hp2 HG02622.hp1 HG02622.hp2 HG03041.hp2	intron_variant	MODIFIER	c.331-668_331-667ins others(2): Show c.331-668_331-667insGA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701245
chrX:52701246	T T	TTC TTC	2	a0001c0001t0002g0060 a0001c0001t0011g0049 a0001c0001t0002g0060 a0001c0001t0011g0049	2	NA18977.hp1 NA19060.hp1 NA18977.hp1 NA19060.hp1	intron_variant	MODIFIER	c.331-669_331-668ins others(2): Show c.331-669_331-668insGA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701246
chrX:52701247	T T	C C	2	a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0067 a0001c0001t0002g0068	2	HG02258.hp1 HG02809.hp2 HG02258.hp1 HG02809.hp2	intron_variant	MODIFIER	c.331-669A>G c.331-669A>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701247
chrX:52701247	T T	TC TC	1	a0001c0001t0005g0050 a0001c0001t0005g0050	1	HG00438.hp1 HG00438.hp1	intron_variant	MODIFIER	c.331-670_331-669ins others(1): Show c.331-670_331-669insG	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701247
chrX:52701248	T T	C C	2	a0001c0001t0004g0062 a0001c0001t0012g0061 a0001c0001t0004g0062 a0001c0001t0012g0061	2	NA18522.hp1 NA19043.hp1 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.331-670A>G c.331-670A>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701248
chrX:52701249	T T	C C	3	a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0002t0005g0022 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0002t0005g0022	3	HG02622.hp1 HG02622.hp2 HG03041.hp2 HG02622.hp1 HG02622.hp2 HG03041.hp2	intron_variant	MODIFIER	c.331-671A>G c.331-671A>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701249
chrX:52701461	A A	G G	4	a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0003g0073 others(1): Show a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0003g0073 a0001c0001t0005g0075	4	HG01168.hp1 HG01175.hp2 HG03471.hp1 others(1): Show HG01168.hp1 HG01175.hp2 HG03471.hp1 HG03704.hp2	intron_variant	MODIFIER	c.331-883T>C c.331-883T>C	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701461
chrX:52701545	C C	G G	1	a0001c0002t0002g0012 a0001c0002t0002g0012	1	HG01169.hp2 HG01169.hp2	intron_variant	MODIFIER	c.331-967G>C c.331-967G>C	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701545
chrX:52701546	G G	C C	1	a0001c0002t0002g0012 a0001c0002t0002g0012	1	HG01169.hp2 HG01169.hp2	intron_variant	MODIFIER	c.331-968C>G c.331-968C>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701546
chrX:52701657	C C	A A	15	a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0072 others(12): Show a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0002g0010 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0003g0073 a0001c0001t0004g0062 a0001c0001t0005g0075 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0012g0061 a0001c0002t0005g0022	16	HG01168.hp1 HG01168.hp2 HG01175.hp1 others(13): Show HG01168.hp1 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG01884.hp1 HG01884.hp2 HG02258.hp1 HG02622.hp1 HG02622.hp2 HG02809.hp2 HG03041.hp2 HG03471.hp1 HG03704.hp1 HG03704.hp2 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.330+924G>T c.330+924G>T	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701657
chrX:52701658	G G	A A	1	a0001c0001t0018g0051 a0001c0001t0018g0051	1	NA18984.hp1 NA18984.hp1	intron_variant	MODIFIER	c.330+923C>T c.330+923C>T	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701658
chrX:52701811	TG TG	T T	1	a0001c0002t0002g0012 a0001c0002t0002g0012	1	HG01169.hp2 HG01169.hp2	intron_variant	MODIFIER	c.330+769delC c.330+769delC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52701811
chrX:52702106	GA GA	G G	1	a0001c0002t0002g0012 a0001c0002t0002g0012	1	HG01169.hp2 HG01169.hp2	intron_variant	MODIFIER	c.330+474delT c.330+474delT	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52702106
chrX:52702121	T T	TCTCTTAA others(2): Show TCTCTTAACA	1	a0001c0002t0002g0012 a0001c0002t0002g0012	1	HG01169.hp2 HG01169.hp2	intron_variant	MODIFIER	c.330+459_330+460ins others(9): Show c.330+459_330+460insTGTTAAGAG	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52702121
chrX:52702416	G G	A A	1	a0001c0001t0005g0075 a0001c0001t0005g0075	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.330+165C>T c.330+165C>T	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	5/7	chrX	52702416
chrX:52702735	A A	G G	71	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 others(68): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0031 a0001c0001t0001g0041 a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0001g0058 a0001c0001t0001g0063 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0002g0002 a0001c0001t0002g0010 a0001c0001t0002g0024 a0001c0001t0002g0037 a0001c0001t0002g0042 a0001c0001t0002g0046 a0001c0001t0002g0060 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0003g0007 a0001c0001t0003g0025 a0001c0001t0003g0032 a0001c0001t0003g0033 a0001c0001t0003g0043 a0001c0001t0003g0055 a0001c0001t0003g0057 a0001c0001t0003g0073 a0001c0001t0004g0003 a0001c0001t0004g0008 a0001c0001t0004g0026 a0001c0001t0004g0034 a0001c0001t0004g0052 a0001c0001t0004g0062 a0001c0001t0005g0009 a0001c0001t0005g0040 a0001c0001t0005g0050 a0001c0001t0005g0059 a0001c0001t0005g0075 a0001c0001t0006g0036 a0001c0001t0006g0039 a0001c0001t0006g0044 a0001c0001t0006g0053 a0001c0001t0007g0054 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0008g0006 a0001c0001t0009g0038 a0001c0001t0011g0049 a0001c0001t0012g0061 a0001c0001t0013g0030 a0001c0001t0015g0056 a0001c0001t0016g0047 a0001c0001t0018g0051 a0001c0002t0001g0016 a0001c0002t0001g0019 a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0003g0018 a0001c0002t0004g0020 a0001c0002t0005g0017 a0001c0002t0005g0022 a0001c0002t0005g0069 a0001c0002t0007g0021 a0002c0003t0001g0029 a0002c0003t0010g0035 a0003c0005t0009g0070	92	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(89): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00609.hp1 HG00673.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01099.hp1 HG01106.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01884.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02132.hp1 HG02258.hp1 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02622.hp2 HG02698.hp1 HG02809.hp1 HG02809.hp2 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03654.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18906.hp1 NA18944.hp1 NA18948.hp1 NA18974.hp1 NA18977.hp1 NA18983.hp1 NA18984.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19060.hp1 NA19066.hp1 NA19070.hp1 NA19083.hp1 NA19091.hp1 NA20905.hp1	intron_variant	MODIFIER	c.281-105T>C c.281-105T>C	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52702735
chrX:52702740	T T	C C	2	a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0007g0065 a0001c0001t0007g0066	2	HG02622.hp1 HG03041.hp2 HG02622.hp1 HG03041.hp2	intron_variant	MODIFIER	c.281-110A>G c.281-110A>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52702740
chrX:52703004	A A	G G	3	a0001c0001t0001g0063 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0001g0063 a0001c0001t0007g0065 a0001c0001t0007g0066	3	HG01884.hp2 HG02622.hp1 HG03041.hp2 HG01884.hp2 HG02622.hp1 HG03041.hp2	intron_variant	MODIFIER	c.281-374T>C c.281-374T>C	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703004
chrX:52703035	C C	T T	2	a0001c0001t0001g0076 a0001c0001t0002g0010 a0001c0001t0001g0076 a0001c0001t0002g0010	3	HG01168.hp2 HG01175.hp1 HG03704.hp1 HG01168.hp2 HG01175.hp1 HG03704.hp1	intron_variant	MODIFIER	c.281-405G>A c.281-405G>A	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703035
chrX:52703189	A A	ATGTTTAG ATGTTTAG	53	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 others(50): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0031 a0001c0001t0001g0041 a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0001g0058 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0002g0002 a0001c0001t0002g0010 a0001c0001t0002g0024 a0001c0001t0002g0037 a0001c0001t0002g0042 a0001c0001t0002g0046 a0001c0001t0002g0060 a0001c0001t0003g0007 a0001c0001t0003g0025 a0001c0001t0003g0032 a0001c0001t0003g0033 a0001c0001t0003g0043 a0001c0001t0003g0055 a0001c0001t0003g0057 a0001c0001t0003g0073 a0001c0001t0004g0003 a0001c0001t0004g0008 a0001c0001t0004g0026 a0001c0001t0004g0034 a0001c0001t0004g0062 a0001c0001t0005g0009 a0001c0001t0005g0040 a0001c0001t0005g0050 a0001c0001t0005g0059 a0001c0001t0005g0075 a0001c0001t0006g0036 a0001c0001t0006g0039 a0001c0001t0006g0044 a0001c0001t0006g0053 a0001c0001t0008g0006 a0001c0001t0009g0038 a0001c0001t0011g0049 a0001c0001t0012g0061 a0001c0001t0013g0030 a0001c0001t0015g0056 a0001c0001t0016g0047 a0001c0001t0018g0051 a0002c0003t0001g0029 a0002c0003t0010g0035	74	HG00099.hp2 HG00280.hp1 HG00408.hp1 others(71): Show HG00099.hp2 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00609.hp1 HG00673.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01099.hp1 HG01106.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02132.hp1 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02698.hp1 HG02809.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03471.hp1 HG03492.hp1 HG03516.hp1 HG03654.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG04228.hp1 NA18522.hp1 NA18948.hp1 NA18974.hp1 NA18977.hp1 NA18983.hp1 NA18984.hp1 NA18994.hp1 NA19000.hp1 NA19009.hp1 NA19043.hp1 NA19060.hp1 NA19066.hp1 NA19070.hp1 NA19083.hp1 NA19091.hp1 NA20905.hp1	intron_variant	MODIFIER	c.281-560_281-559ins others(7): Show c.281-560_281-559insCTAAACA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703189
chrX:52703191	A A	T T	53	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 others(50): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0031 a0001c0001t0001g0041 a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0001g0058 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0002g0002 a0001c0001t0002g0010 a0001c0001t0002g0024 a0001c0001t0002g0037 a0001c0001t0002g0042 a0001c0001t0002g0046 a0001c0001t0002g0060 a0001c0001t0003g0007 a0001c0001t0003g0025 a0001c0001t0003g0032 a0001c0001t0003g0033 a0001c0001t0003g0043 a0001c0001t0003g0055 a0001c0001t0003g0057 a0001c0001t0003g0073 a0001c0001t0004g0003 a0001c0001t0004g0008 a0001c0001t0004g0026 a0001c0001t0004g0034 a0001c0001t0004g0062 a0001c0001t0005g0009 a0001c0001t0005g0040 a0001c0001t0005g0050 a0001c0001t0005g0059 a0001c0001t0005g0075 a0001c0001t0006g0036 a0001c0001t0006g0039 a0001c0001t0006g0044 a0001c0001t0006g0053 a0001c0001t0008g0006 a0001c0001t0009g0038 a0001c0001t0011g0049 a0001c0001t0012g0061 a0001c0001t0013g0030 a0001c0001t0015g0056 a0001c0001t0016g0047 a0001c0001t0018g0051 a0002c0003t0001g0029 a0002c0003t0010g0035	74	HG00099.hp2 HG00280.hp1 HG00408.hp1 others(71): Show HG00099.hp2 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00609.hp1 HG00673.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01099.hp1 HG01106.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02132.hp1 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02698.hp1 HG02809.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03471.hp1 HG03492.hp1 HG03516.hp1 HG03654.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG04228.hp1 NA18522.hp1 NA18948.hp1 NA18974.hp1 NA18977.hp1 NA18983.hp1 NA18984.hp1 NA18994.hp1 NA19000.hp1 NA19009.hp1 NA19043.hp1 NA19060.hp1 NA19066.hp1 NA19070.hp1 NA19083.hp1 NA19091.hp1 NA20905.hp1	intron_variant	MODIFIER	c.281-561T>A c.281-561T>A	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703191
chrX:52703273	T T	TC TC	1	a0001c0002t0002g0012 a0001c0002t0002g0012	1	HG01169.hp2 HG01169.hp2	intron_variant	MODIFIER	c.281-644dupG c.281-644dupG	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703273
chrX:52703274	C C	A A	1	a0001c0001t0001g0063 a0001c0001t0001g0063	1	HG01884.hp2 HG01884.hp2	intron_variant	MODIFIER	c.281-644G>T c.281-644G>T	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703274
chrX:52703320	A A	G G	56	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 others(53): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0031 a0001c0001t0001g0041 a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0001g0058 a0001c0001t0001g0063 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0002g0002 a0001c0001t0002g0010 a0001c0001t0002g0024 a0001c0001t0002g0037 a0001c0001t0002g0042 a0001c0001t0002g0046 a0001c0001t0002g0060 a0001c0001t0003g0007 a0001c0001t0003g0025 a0001c0001t0003g0032 a0001c0001t0003g0033 a0001c0001t0003g0043 a0001c0001t0003g0055 a0001c0001t0003g0057 a0001c0001t0003g0073 a0001c0001t0004g0003 a0001c0001t0004g0008 a0001c0001t0004g0026 a0001c0001t0004g0034 a0001c0001t0004g0062 a0001c0001t0005g0009 a0001c0001t0005g0040 a0001c0001t0005g0050 a0001c0001t0005g0059 a0001c0001t0005g0075 a0001c0001t0006g0036 a0001c0001t0006g0039 a0001c0001t0006g0044 a0001c0001t0006g0053 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0008g0006 a0001c0001t0009g0038 a0001c0001t0011g0049 a0001c0001t0012g0061 a0001c0001t0013g0030 a0001c0001t0015g0056 a0001c0001t0016g0047 a0001c0001t0018g0051 a0002c0003t0001g0029 a0002c0003t0010g0035	77	HG00099.hp2 HG00280.hp1 HG00408.hp1 others(74): Show HG00099.hp2 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00609.hp1 HG00673.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01099.hp1 HG01106.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01884.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02132.hp1 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02622.hp1 HG02698.hp1 HG02809.hp1 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03041.hp2 HG03471.hp1 HG03492.hp1 HG03516.hp1 HG03654.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG04228.hp1 NA18522.hp1 NA18948.hp1 NA18974.hp1 NA18977.hp1 NA18983.hp1 NA18984.hp1 NA18994.hp1 NA19000.hp1 NA19009.hp1 NA19043.hp1 NA19060.hp1 NA19066.hp1 NA19070.hp1 NA19083.hp1 NA19091.hp1 NA20905.hp1	intron_variant	MODIFIER	c.281-690T>C c.281-690T>C	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703320
chrX:52703441	TG TG	T T	1	a0001c0002t0002g0012 a0001c0002t0002g0012	1	HG01169.hp2 HG01169.hp2	intron_variant	MODIFIER	c.281-812delC c.281-812delC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703441
chrX:52703604	ACTTT ACTTT	A A	2	a0001c0001t0001g0064 a0001c0002t0005g0022 a0001c0001t0001g0064 a0001c0002t0005g0022	2	HG01884.hp1 HG02622.hp2 HG01884.hp1 HG02622.hp2	intron_variant	MODIFIER	c.280+889_280+892del others(4): Show c.280+889_280+892delAAAG	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703604
chrX:52703619	TTC TTC	T T	1	a0001c0001t0006g0053 a0001c0001t0006g0053	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.280+876_280+877del others(2): Show c.280+876_280+877delGA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703619
chrX:52703621	C C	CT CT	4	a0001c0001t0001g0014 a0001c0001t0005g0075 a0001c0002t0001g0016 others(1): Show a0001c0001t0001g0014 a0001c0001t0005g0075 a0001c0002t0001g0016 a0001c0002t0002g0012	4	HG01169.hp2 HG02895.hp1 HG03471.hp1 others(1): Show HG01169.hp2 HG02895.hp1 HG03471.hp1 NA18944.hp1	intron_variant	MODIFIER	c.280+875dupA c.280+875dupA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703621
chrX:52703621	C C	CTT CTT	50	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 others(47): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0028 a0001c0001t0001g0031 a0001c0001t0001g0041 a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0001g0058 a0001c0001t0001g0063 a0001c0001t0002g0002 a0001c0001t0002g0024 a0001c0001t0002g0037 a0001c0001t0002g0042 a0001c0001t0002g0046 a0001c0001t0002g0060 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0003g0007 a0001c0001t0003g0025 a0001c0001t0003g0032 a0001c0001t0003g0033 a0001c0001t0003g0043 a0001c0001t0003g0055 a0001c0001t0003g0057 a0001c0001t0004g0003 a0001c0001t0004g0008 a0001c0001t0004g0026 a0001c0001t0004g0034 a0001c0001t0004g0052 a0001c0001t0004g0062 a0001c0001t0005g0009 a0001c0001t0005g0040 a0001c0001t0005g0050 a0001c0001t0005g0059 a0001c0001t0006g0036 a0001c0001t0006g0039 a0001c0001t0006g0044 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0008g0006 a0001c0001t0009g0038 a0001c0001t0011g0049 a0001c0001t0012g0061 a0001c0001t0013g0030 a0001c0001t0015g0056 a0001c0001t0016g0047 a0001c0001t0018g0051 a0001c0002t0002g0023 a0002c0003t0010g0035	70	HG00099.hp2 HG00280.hp1 HG00408.hp1 others(67): Show HG00099.hp2 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00609.hp1 HG00673.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01099.hp1 HG01106.hp1 HG01167.hp1 HG01169.hp1 HG01192.hp1 HG01884.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02132.hp1 HG02258.hp1 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02622.hp1 HG02698.hp1 HG02809.hp1 HG02809.hp2 HG02965.hp1 HG03041.hp2 HG03492.hp1 HG03516.hp1 HG03654.hp1 HG03710.hp1 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG04228.hp1 NA18522.hp1 NA18974.hp1 NA18977.hp1 NA18983.hp1 NA18984.hp1 NA18994.hp1 NA19000.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19060.hp1 NA19066.hp1 NA19070.hp1 NA19083.hp1 NA19091.hp1 NA20905.hp1	intron_variant	MODIFIER	c.280+874_280+875dup others(2): Show c.280+874_280+875dupAA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703621
chrX:52703621	C C	CTTT CTTT	2	a0001c0001t0001g0027 a0002c0003t0001g0029 a0001c0001t0001g0027 a0002c0003t0001g0029	2	HG02055.hp1 NA18948.hp1 HG02055.hp1 NA18948.hp1	intron_variant	MODIFIER	c.280+873_280+875dup others(3): Show c.280+873_280+875dupAAA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703621
chrX:52703624	T T	TC TC	3	a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0003g0073 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0003g0073	3	HG01168.hp1 HG01175.hp2 HG03704.hp2 HG01168.hp1 HG01175.hp2 HG03704.hp2	intron_variant	MODIFIER	c.280+872_280+873ins others(1): Show c.280+872_280+873insG	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703624
chrX:52703625	T T	C C	1	a0001c0002t0005g0069 a0001c0002t0005g0069	1	HG02015.hp1 HG02015.hp1	intron_variant	MODIFIER	c.280+872A>G c.280+872A>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703625
chrX:52703907	A A	C C	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	HG01169.hp1 HG01169.hp1	intron_variant	MODIFIER	c.280+590T>G c.280+590T>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703907
chrX:52703986	T T	A A	1	a0001c0001t0003g0055 a0001c0001t0003g0055	1	HG03516.hp1 HG03516.hp1	intron_variant	MODIFIER	c.280+511A>T c.280+511A>T	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52703986
chrX:52704188	T T	G G	4	a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0007g0065 others(1): Show a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0007g0065 a0001c0001t0007g0066	4	HG02258.hp1 HG02622.hp1 HG02809.hp2 others(1): Show HG02258.hp1 HG02622.hp1 HG02809.hp2 HG03041.hp2	intron_variant	MODIFIER	c.280+309A>C c.280+309A>C	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52704188
chrX:52704365	A A	AT AT	5	a0001c0001t0001g0027 a0001c0001t0003g0005 a0001c0002t0017g0015 others(2): Show a0001c0001t0001g0027 a0001c0001t0003g0005 a0001c0002t0017g0015 a0003c0005t0009g0070 a0004c0004t0014g0011	6	HG01243.hp1 HG02055.hp1 HG03041.hp1 others(3): Show HG01243.hp1 HG02055.hp1 HG03041.hp1 HG03098.hp1 HG03139.hp1 NA18906.hp2	intron_variant	MODIFIER	c.280+131dupA c.280+131dupA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52704365
chrX:52704365	AT AT	A A	11	a0001c0001t0001g0014 a0001c0001t0001g0063 a0001c0001t0001g0064 others(8): Show a0001c0001t0001g0014 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0076 a0001c0001t0002g0010 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0005g0075 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0015g0056	12	HG01168.hp2 HG01175.hp1 HG01884.hp1 others(9): Show HG01168.hp2 HG01175.hp1 HG01884.hp1 HG01884.hp2 HG02040.hp1 HG02258.hp1 HG02622.hp1 HG02809.hp2 HG02895.hp1 HG03041.hp2 HG03471.hp1 HG03704.hp1	intron_variant	MODIFIER	c.280+131delA c.280+131delA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52704365
chrX:52704365	ATT ATT	A A	3	a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0003g0073 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0003g0073	3	HG01168.hp1 HG01175.hp2 HG03704.hp2 HG01168.hp1 HG01175.hp2 HG03704.hp2	intron_variant	MODIFIER	c.280+130_280+131del others(2): Show c.280+130_280+131delAA	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	4/7	chrX	52704365
chrX:52704644	TGG TGG	T T	1	a0001c0002t0002g0012 a0001c0002t0002g0012	1	HG01169.hp2 HG01169.hp2	intron_variant	MODIFIER	c.185-54_185-53delCC c.185-54_185-53delCC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	3/7	chrX	52704644
chrX:52704683	A A	G G	1	a0001c0001t0004g0026 a0001c0001t0004g0026	1	HG00609.hp1 HG00609.hp1	intron_variant	MODIFIER	c.185-91T>C c.185-91T>C	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	3/7	chrX	52704683
chrX:52704779	C C	CA CA	17	a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0058 others(14): Show a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0058 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0076 a0001c0001t0002g0010 a0001c0001t0002g0060 a0001c0001t0002g0067 a0001c0001t0003g0005 a0001c0001t0003g0057 a0001c0001t0004g0062 a0001c0001t0005g0059 a0001c0001t0005g0075 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0012g0061	19	HG00099.hp2 HG01168.hp2 HG01175.hp1 others(16): Show HG00099.hp2 HG01168.hp2 HG01175.hp1 HG01884.hp1 HG01884.hp2 HG01934.hp1 HG02027.hp1 HG02056.hp1 HG02622.hp1 HG02809.hp2 HG02895.hp1 HG03041.hp1 HG03041.hp2 HG03139.hp1 HG03471.hp1 HG03704.hp1 NA18522.hp1 NA18977.hp1 NA19043.hp1	intron_variant	MODIFIER	c.185-188dupT c.185-188dupT	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	3/7	chrX	52704779
chrX:52704779	C C	CAA CAA	1	a0001c0001t0002g0068 a0001c0001t0002g0068	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.185-189_185-188dup others(2): Show c.185-189_185-188dupTT	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	3/7	chrX	52704779
chrX:52704779	CA CA	C C	5	a0001c0001t0001g0074 a0001c0001t0002g0024 a0001c0001t0003g0025 others(2): Show a0001c0001t0001g0074 a0001c0001t0002g0024 a0001c0001t0003g0025 a0001c0001t0003g0073 a0001c0002t0005g0022	5	HG01175.hp2 HG02572.hp1 HG02622.hp2 others(2): Show HG01175.hp2 HG02572.hp1 HG02622.hp2 HG03704.hp2 HG03710.hp1	intron_variant	MODIFIER	c.185-188delT c.185-188delT	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	3/7	chrX	52704779
chrX:52704779	CAA CAA	C C	12	a0001c0001t0001g0072 a0001c0002t0001g0016 a0001c0002t0001g0019 others(9): Show a0001c0001t0001g0072 a0001c0002t0001g0016 a0001c0002t0001g0019 a0001c0002t0001g0071 a0001c0002t0003g0018 a0001c0002t0004g0020 a0001c0002t0005g0017 a0001c0002t0005g0069 a0001c0002t0007g0021 a0001c0002t0017g0015 a0003c0005t0009g0070 a0004c0004t0014g0011	12	HG00099.hp1 HG01168.hp1 HG01243.hp1 others(9): Show HG00099.hp1 HG01168.hp1 HG01243.hp1 HG02015.hp1 HG02602.hp1 HG03098.hp1 HG03490.hp1 HG03516.hp2 NA18612.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1	intron_variant	MODIFIER	c.185-189_185-188del others(2): Show c.185-189_185-188delTT	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	3/7	chrX	52704779
chrX:52704848	A A	AG AG	1	a0001c0002t0017g0015 a0001c0002t0017g0015	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.185-257dupC c.185-257dupC	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	3/7	chrX	52704848
chrX:52705246	CA CA	C C	4	a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0003g0005 others(1): Show a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0003g0005 a0001c0002t0002g0012	5	HG01169.hp2 HG01934.hp1 HG02895.hp1 others(2): Show HG01169.hp2 HG01934.hp1 HG02895.hp1 HG03041.hp1 HG03139.hp1	splice_region_variant&intron_variant	LOW	c.70-5delT c.70-5delT	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	2/7	chrX	52705246
chrX:52705605	T T	C C	1	a0001c0002t0005g0069 a0001c0002t0005g0069	1	HG02015.hp1 HG02015.hp1	intron_variant	MODIFIER	c.69+76A>G c.69+76A>G	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	2/7	chrX	52705605
chrX:52705831	G G	A A	2	a0001c0002t0001g0071 a0003c0005t0009g0070 a0001c0002t0001g0071 a0003c0005t0009g0070	2	HG03098.hp1 HG03516.hp2 HG03098.hp1 HG03516.hp2	intron_variant	MODIFIER	c.-20-62C>T c.-20-62C>T	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	1/7	chrX	52705831
chrX:52706458	C C	T T	76	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 others(73): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0031 a0001c0001t0001g0041 a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0001g0058 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0002g0002 a0001c0001t0002g0010 a0001c0001t0002g0024 a0001c0001t0002g0037 a0001c0001t0002g0042 a0001c0001t0002g0046 a0001c0001t0002g0060 a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0003g0005 a0001c0001t0003g0007 a0001c0001t0003g0025 a0001c0001t0003g0032 a0001c0001t0003g0033 a0001c0001t0003g0043 a0001c0001t0003g0055 a0001c0001t0003g0057 a0001c0001t0003g0073 a0001c0001t0004g0003 a0001c0001t0004g0008 a0001c0001t0004g0026 a0001c0001t0004g0034 a0001c0001t0004g0052 a0001c0001t0004g0062 a0001c0001t0005g0009 a0001c0001t0005g0040 a0001c0001t0005g0050 a0001c0001t0005g0059 a0001c0001t0005g0075 a0001c0001t0006g0036 a0001c0001t0006g0039 a0001c0001t0006g0044 a0001c0001t0006g0053 a0001c0001t0007g0054 a0001c0001t0007g0065 a0001c0001t0007g0066 a0001c0001t0008g0006 a0001c0001t0009g0038 a0001c0001t0011g0049 a0001c0001t0012g0061 a0001c0001t0013g0030 a0001c0001t0015g0056 a0001c0001t0016g0047 a0001c0001t0018g0051 a0001c0002t0001g0016 a0001c0002t0001g0019 a0001c0002t0001g0071 a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0003g0018 a0001c0002t0004g0020 a0001c0002t0005g0017 a0001c0002t0005g0022 a0001c0002t0005g0069 a0001c0002t0007g0021 a0001c0002t0017g0015 a0002c0003t0001g0029 a0002c0003t0010g0035 a0003c0005t0009g0070 a0004c0004t0014g0011	98	HG00099.hp1 HG00099.hp2 HG00280.hp1 others(95): Show HG00099.hp1 HG00099.hp2 HG00280.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00609.hp1 HG00673.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01099.hp1 HG01106.hp1 HG01167.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02132.hp1 HG02258.hp1 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02622.hp2 HG02698.hp1 HG02809.hp1 HG02809.hp2 HG02895.hp1 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03654.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG04228.hp1 NA18522.hp1 NA18612.hp1 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18948.hp1 NA18974.hp1 NA18977.hp1 NA18983.hp1 NA18984.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19060.hp1 NA19066.hp1 NA19070.hp1 NA19083.hp1 NA19091.hp1 NA20905.hp1	intron_variant	MODIFIER	c.-21+654G>A c.-21+654G>A	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	1/7	chrX	52706458
chrX:52706681	C C	T T	3	a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0003g0073 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0003g0073	3	HG01168.hp1 HG01175.hp2 HG03704.hp2 HG01168.hp1 HG01175.hp2 HG03704.hp2	intron_variant	MODIFIER	c.-21+431G>A c.-21+431G>A	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	1/7	chrX	52706681
chrX:52707099	G G	A A	6	a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0076 others(3): Show a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0002g0010 a0001c0001t0003g0073 a0001c0001t0005g0075	7	HG01168.hp1 HG01168.hp2 HG01175.hp1 others(4): Show HG01168.hp1 HG01168.hp2 HG01175.hp1 HG01175.hp2 HG03471.hp1 HG03704.hp1 HG03704.hp2	intron_variant	MODIFIER	c.-21+13C>T c.-21+13C>T	SSX2	ENSG00000241476.9	transcript	ENST00000337502.6	protein_coding	1/7	chrX	52707099

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🧬 JoGo Online Haplotype Explorer SSX2_chrX_52691896_52712178

JoGo Local Haplotype Explorer (on iGV) SSX2_chrX_52691896_52712178

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 4)

CCoding Level Haplotype Info (Total: 5)

TTranscript Level Haplotype Info (Total: 18)

GGenebody Level Haplotype Info (Total: 76)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 5)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 26)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 76)

Haplotype Details by Sample (Haploid Level) (Total: 98)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 3)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 22)

GGenebody Level Haplotype Variants (Intron) (Total: 89)

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Annotation (Repeats)

Annotation (SNP Array)